Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015792A_C01 KMC015792A_c01
(418 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB03155.1| gene_id:MQC3.30~unknown protein [Arabidopsis tha... 42 0.002
ref|NP_187854.1| unknown protein; protein id: At3g12480.1 [Arabi... 42 0.002
gb|EAA20916.1| karyopherin beta [Plasmodium yoelii yoelii] 30 5.4
pir||T26244 hypothetical protein W06G6.4 - Caenorhabditis elegans 30 5.4
>dbj|BAB03155.1| gene_id:MQC3.30~unknown protein [Arabidopsis thaliana]
gi|18087597|gb|AAL58929.1|AF462841_1 At3g12480/MQC3.32
[Arabidopsis thaliana] gi|23505853|gb|AAN28786.1|
At3g12480/MQC3.32 [Arabidopsis thaliana]
Length = 293
Score = 41.6 bits (96), Expect = 0.002
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = -3
Query: 416 WSLSDVEKMAIDPIQLANLNTRIDDDVEDYDE 321
W + D+ KM DP QLA+L RID+D EDYDE
Sbjct: 262 WPMMDISKM--DPAQLASLGKRIDEDEEDYDE 291
>ref|NP_187854.1| unknown protein; protein id: At3g12480.1 [Arabidopsis thaliana]
gi|12321975|gb|AAG51032.1|AC069474_31 unknown protein;
69004-67516 [Arabidopsis thaliana]
Length = 297
Score = 41.6 bits (96), Expect = 0.002
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = -3
Query: 416 WSLSDVEKMAIDPIQLANLNTRIDDDVEDYDE 321
W + D+ KM DP QLA+L RID+D EDYDE
Sbjct: 266 WPMMDISKM--DPAQLASLGKRIDEDEEDYDE 295
>gb|EAA20916.1| karyopherin beta [Plasmodium yoelii yoelii]
Length = 1126
Score = 30.4 bits (67), Expect = 5.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -3
Query: 413 SLSDVEKMAIDPIQLANLNTRIDDDVEDYDEV*INLCQFNYDFCRSSDGELEYRF 249
S+SDV + L ++ ID + + + + NLC +D C ++ EL Y F
Sbjct: 245 SVSDVAVLDECEKVLQSIGKMIDYNAKFFSKYISNLCDILFDICMKNENELNYDF 299
>pir||T26244 hypothetical protein W06G6.4 - Caenorhabditis elegans
Length = 281
Score = 30.4 bits (67), Expect = 5.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = +3
Query: 267 SIRTSTEVIVELTQVYL------DFIIIFHIIINPCIQVSQLYGIDGHFFHI 404
+I+T+T+++ LT ++ D IF I PC ++S + GH F I
Sbjct: 41 TIKTATDILASLTSFFVMQRLITDGTSIFIIPTGPCTRISPIACYSGHMFMI 92
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,084,319
Number of Sequences: 1393205
Number of extensions: 5836805
Number of successful extensions: 11324
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11276
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
