>KMC015777A_C01 KMC015777A_c01
ccCCCTTCTAACCTCTCTTCTCTTCTTCTGCAAACTTCTCCACACCATGGCTTCGTGTAC
CGCACCTTCTTCATCTCTCATGCTCACGCACTCACAAGACCTCTCTCCTTCTCTCCGTTC
CAGAACCACCTCCTTCTCCCTCTCCAGAACCTTCTCTCTTTACCCTCTCGTTCTCAAGCC
TCCTACCAACTCCCTCCACCTCACCTCCCCCCACTTCAGGCCTGCTGCCCTCGCCGCCGA
GGTCGAGGTCGCCGAAACCCTCGACGACAAGGAGGATGATGGGCCCTCCAAGCCTAAGAC
AGGGAAGGCCGCATTACTTCTCAAGAGGGATAGGACAAGGTCTAAGAGGTTCCTGGAAAT
TCAAAAATTGAGGGAGCGTAAGAAAGAGTACGACTTGAAGACAGCAATATCTTTGGTTAA
AGAAACAGCTAAGACCAAATTTGTAGAAACAGTAGAAGCTCATTTCCGCCTCAACATTGA
CCCTAAATATAATGATCAACAGTTAAGAGCAACAGTAAGTCTGCCAAAGGGAACTGGAAA
GCCCATTAAAGTGGCTGTTCTCACTCAAGGTGAAAGATTTGATG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC015777A_C01 KMC015777A_c01
         (584 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_191908.1| chloroplast ribosomal L1 - like protein; protei...   180  1e-44
pir||T51934 ribosomal protein L1 protein [imported] - Arabidopsi...   177  9e-44
pir||T51935 ribosomal protein L1 [imported] - spinach gi|7414578...   173  1e-42
sp|P49208|RK1_PEA 50S RIBOSOMAL PROTEIN L1, CHLOROPLAST PRECURSO...   169  2e-41
ref|ZP_00075008.1| hypothetical protein [Trichodesmium erythraeu...    91  1e-17

>ref|NP_191908.1| chloroplast ribosomal L1 - like protein; protein id: At3g63490.1,
           supported by cDNA: gi_15450736, supported by cDNA:
           gi_16649118 [Arabidopsis thaliana]
           gi|11358771|pir||T49190 ribosomal protein L1-like
           protein - Arabidopsis thaliana
           gi|7573332|emb|CAB87802.1| chloroplast ribosomal L1-like
           protein [Arabidopsis thaliana]
           gi|15450737|gb|AAK96640.1| AT3g63490/MAA21_120
           [Arabidopsis thaliana] gi|16649119|gb|AAL24411.1|
           chloroplast ribosomal L1-like protein [Arabidopsis
           thaliana] gi|22137008|gb|AAM91349.1| At3g63490/MAA21_120
           [Arabidopsis thaliana] gi|24899727|gb|AAN65078.1|
           chloroplast ribosomal L1-like protein [Arabidopsis
           thaliana]
          Length = 346

 Score =  180 bits (456), Expect = 1e-44
 Identities = 115/197 (58%), Positives = 139/197 (70%), Gaps = 18/197 (9%)
 Frame = +2

Query: 47  MASCTAPSSSLML------THSQDLSPSLRSRTTSFSLSRTFSL-YPLVLKPPTN----- 190
           MA+C A  SSLML      T SQDL+P+      SF+ SR   L +PL+L   +      
Sbjct: 1   MAAC-ATHSSLMLAYAAASTRSQDLTPT--PSLFSFASSRPNHLSFPLLLLGGSRDRRCA 57

Query: 191 SLHLTSPH-FRPAALAAEVEVAETLDDKEDDG-----PSKPKTGKAALLLKRDRTRSKRF 352
           ++   S H F  +A+AAE ++ +T +D E        P KPK GKAAL+LKRDRTRSKRF
Sbjct: 58  AIDRASNHKFIVSAVAAEADL-DTEEDLEQTATAVLDPPKPKKGKAALVLKRDRTRSKRF 116

Query: 353 LEIQKLRERKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKG 532
           LEIQKLRE KKEYD+ TAISL+K+TA T+FVE+VEAHFRLNIDPKYNDQQLRATVSLPKG
Sbjct: 117 LEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKG 176

Query: 533 TGKPIKVAVLTQGERFD 583
           TG+ + VAVL QGE+ D
Sbjct: 177 TGQTVIVAVLAQGEKVD 193

>pir||T51934 ribosomal protein L1 protein [imported] - Arabidopsis thaliana
           gi|7572940|emb|CAA62364.1| L1 protein [Arabidopsis
           thaliana]
          Length = 346

 Score =  177 bits (449), Expect = 9e-44
 Identities = 114/197 (57%), Positives = 138/197 (69%), Gaps = 18/197 (9%)
 Frame = +2

Query: 47  MASCTAPSSSLML------THSQDLSPSLRSRTTSFSLSRTFSL-YPLVLKPPTN----- 190
           MA+C A  SSLML      T +QDL+P+      SF+ SR   L  PL+L   +      
Sbjct: 1   MAAC-ATHSSLMLAYAAASTRAQDLTPT--PSLFSFASSRPNHLSVPLLLLGGSRDRRCA 57

Query: 191 SLHLTSPH-FRPAALAAEVEVAETLDDKEDDG-----PSKPKTGKAALLLKRDRTRSKRF 352
           ++   S H F  +A+AAE ++ +T +D E        P KPK GKAAL+LKRDRTRSKRF
Sbjct: 58  AIDRASNHKFIVSAVAAEADL-DTEEDLEQTATAVLDPPKPKKGKAALVLKRDRTRSKRF 116

Query: 353 LEIQKLRERKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKG 532
           LEIQKLRE KKEYD+ TAISL+K+TA T+FVE+VEAHFRLNIDPKYNDQQLRATVSLPKG
Sbjct: 117 LEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKG 176

Query: 533 TGKPIKVAVLTQGERFD 583
           TG+ + VAVL QGE+ D
Sbjct: 177 TGQTVIVAVLAQGEKVD 193

>pir||T51935 ribosomal protein L1 [imported] - spinach
           gi|7414578|emb|CAA54255.1| ribosomal protein L1
           [Spinacia oleracea]
          Length = 352

 Score =  173 bits (439), Expect = 1e-42
 Identities = 89/127 (70%), Positives = 105/127 (82%), Gaps = 7/127 (5%)
 Frame = +2

Query: 224 AALAAEVEVAETLDDKEDDG-------PSKPKTGKAALLLKRDRTRSKRFLEIQKLRERK 382
           AA+AAE EVA+  +++ + G       P+KPK GKAAL LK DRTRSKRFLEIQKLRE K
Sbjct: 73  AAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSKRFLEIQKLREIK 132

Query: 383 KEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVL 562
           +EYDLKTA+SL+K+ + TKFVET EAHFRLNIDPKYNDQQLRATVSLPKGTGK +K+AVL
Sbjct: 133 QEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVL 192

Query: 563 TQGERFD 583
            QG++ D
Sbjct: 193 AQGDKID 199

>sp|P49208|RK1_PEA 50S RIBOSOMAL PROTEIN L1, CHLOROPLAST PRECURSOR
           gi|7440580|pir||T06492 ribosomal protein L1, chloroplast
           - garden pea (fragment) gi|577089|emb|CAA58020.1|
           chloroplast ribosomal protein L1 [Pisum sativum]
          Length = 208

 Score =  169 bits (429), Expect = 2e-41
 Identities = 88/100 (88%), Positives = 89/100 (89%)
 Frame = +2

Query: 284 PSKPKTGKAALLLKRDRTRSKRFLEIQKLRERKKEYDLKTAISLVKETAKTKFVETVEAH 463
           P   + GK    LK DR RSKRFLEIQKLRE KKEYDLKTAISLVKETAKTKFVETVEAH
Sbjct: 38  PLSLRQGKLHWRLKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAH 97

Query: 464 FRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFD 583
           FRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFD
Sbjct: 98  FRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFD 137

>ref|ZP_00075008.1| hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 160

 Score = 90.5 bits (223), Expect = 1e-17
 Identities = 44/79 (55%), Positives = 60/79 (75%)
 Frame = +2

Query: 341 SKRFLEIQKLRERKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVS 520
           S+R  E++K  E ++ Y+ K A+ L+KETA  KF+E  EAH RL IDPKY DQQLR TV+
Sbjct: 6   SRRLQELRKKVE-ERPYEPKEALQLLKETATAKFLEAAEAHVRLGIDPKYTDQQLRTTVA 64

Query: 521 LPKGTGKPIKVAVLTQGER 577
           LPKGTG+ I++AV+ +GE+
Sbjct: 65  LPKGTGQTIRIAVIAKGEK 83

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,654,409
Number of Sequences: 1393205
Number of extensions: 15098750
Number of successful extensions: 186077
Number of sequences better than 10.0: 3363
Number of HSP's better than 10.0 without gapping: 97476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148880
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MWM153g08_f AV767115 1 584 2 MFB004f02_f BP034197 1 567

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