Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015774A_C01 KMC015774A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564714.1| expressed protein; protein id: At1g56220.1, sup... 106 2e-22
gb|AAM62422.1|AF515796_1 Drm4 [Pisum sativum] 102 4e-21
pir||G96603 unknown protein F14G9.17 [imported] - Arabidopsis th... 100 1e-20
gb|AAM62421.1|AF515795_1 Drm3 [Pisum sativum] 91 8e-18
gb|AAB88876.1| putative auxin-repressed protein [Prunus armeniaca] 82 4e-15
>ref|NP_564714.1| expressed protein; protein id: At1g56220.1, supported by cDNA:
22928. [Arabidopsis thaliana] gi|21592368|gb|AAM64319.1|
putative auxin-repressed protein [Arabidopsis thaliana]
Length = 137
Score = 106 bits (264), Expect = 2e-22
Identities = 56/74 (75%), Positives = 60/74 (80%), Gaps = 2/74 (2%)
Frame = -2
Query: 586 TRSIMIVKPPGYQSPSGSAPASPAGSTPPVSPFSAPLSPFSGTRESFRFRRRSTSDAYEK 407
TRSIMI+KPPGYQ SAPASPAGSTPP+SPFS PLSPFSG +E FRFRRRSTSDA+EK
Sbjct: 62 TRSIMIIKPPGYQG--SSAPASPAGSTPPLSPFSPPLSPFSGGKEPFRFRRRSTSDAFEK 119
Query: 406 AA--SEKRPSPSSP 371
AA SE P S P
Sbjct: 120 AAGGSETGPRSSPP 133
>gb|AAM62422.1|AF515796_1 Drm4 [Pisum sativum]
Length = 129
Score = 102 bits (254), Expect = 4e-21
Identities = 56/77 (72%), Positives = 57/77 (73%), Gaps = 2/77 (2%)
Frame = -2
Query: 586 TRSIMIVKPPGYQSPSGSAPASPAGSTPPVSPFSAPLSPFSGTRESFRFRRRSTSDAYEK 407
TRSIMIVKP GYQSPSGSAPASPAGSTP PLSPFSG RE FRFRRRS SDAYE
Sbjct: 60 TRSIMIVKPAGYQSPSGSAPASPAGSTP-------PLSPFSGAREPFRFRRRSISDAYES 112
Query: 406 --AASEKRPSPSSPFHV 362
+ RPS SSPF V
Sbjct: 113 EVKTGQNRPSSSSPFDV 129
>pir||G96603 unknown protein F14G9.17 [imported] - Arabidopsis thaliana
gi|12321756|gb|AAG50916.1|AC069159_17 unknown protein
[Arabidopsis thaliana]
Length = 140
Score = 100 bits (250), Expect = 1e-20
Identities = 56/77 (72%), Positives = 60/77 (77%), Gaps = 5/77 (6%)
Frame = -2
Query: 586 TRSIMIVKPPGYQSPSGSAPASPAGSTPPVSPFSAPLSPFS---GTRESFRFRRRSTSDA 416
TRSIMI+KPPGYQ SAPASPAGSTPP+SPFS PLSPFS G +E FRFRRRSTSDA
Sbjct: 62 TRSIMIIKPPGYQG--SSAPASPAGSTPPLSPFSPPLSPFSANAGGKEPFRFRRRSTSDA 119
Query: 415 YEKAA--SEKRPSPSSP 371
+EKAA SE P S P
Sbjct: 120 FEKAAGGSETGPRSSPP 136
>gb|AAM62421.1|AF515795_1 Drm3 [Pisum sativum]
Length = 124
Score = 91.3 bits (225), Expect = 8e-18
Identities = 53/75 (70%), Positives = 56/75 (74%)
Frame = -2
Query: 586 TRSIMIVKPPGYQSPSGSAPASPAGSTPPVSPFSAPLSPFSGTRESFRFRRRSTSDAYEK 407
TRSIMIVKPPGYQS GS PASPAGS PVSPFS GTRESFRFRRRS SDA+EK
Sbjct: 60 TRSIMIVKPPGYQS--GSPPASPAGSVTPVSPFS-------GTRESFRFRRRSASDAFEK 110
Query: 406 AASEKRPSPSSPFHV 362
++ R S SSPF V
Sbjct: 111 -KNQDRSSSSSPFDV 124
>gb|AAB88876.1| putative auxin-repressed protein [Prunus armeniaca]
Length = 133
Score = 82.4 bits (202), Expect = 4e-15
Identities = 51/80 (63%), Positives = 52/80 (64%), Gaps = 5/80 (6%)
Frame = -2
Query: 586 TRSIMIVKPPGYQSP-SGSAPASPAGSTPPVSPFSAPLSPFSGTRESFRFRRRSTSDAYE 410
TRSIMIVKPPGY S SGS P SPAGSTPPVSPFS G RFRRRS SDAYE
Sbjct: 61 TRSIMIVKPPGYGSGNSGSPPISPAGSTPPVSPFS-------GGSSMGRFRRRSASDAYE 113
Query: 409 KAA----SEKRPSPSSPFHV 362
KA+ R SP SPF V
Sbjct: 114 KASQVGGGGARSSPRSPFDV 133
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,115,653
Number of Sequences: 1393205
Number of extensions: 10930035
Number of successful extensions: 61369
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 50112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59735
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
