Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015757A_C01 KMC015757A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_244721.1| PTS system, mannitol-specific enzyme II, BC com... 35 0.38
ref|NP_705134.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.9
pir||A43932 mucin 2 precursor, intestinal - human (fragments) 33 2.5
gb|EAA01891.1| ebiP30 [Anopheles gambiae str. PEST] 33 2.5
gb|AAA36334.1| intestinal mucin 33 2.5
>ref|NP_244721.1| PTS system, mannitol-specific enzyme II, BC component [Bacillus
halodurans] gi|14285693|sp|Q9K678|PTMB_BACHD PTS system,
mannitol-specific IIBC component (EIIBC-Mtl)
(Mannitol-permease IIBC component) (Phosphotransferase
enzyme II, BC component) (EII-Mtl)
gi|25287852|pir||F84131 PTS system, mannitol-specific
enzyme II, BC component BH3854 [imported] - Bacillus
halodurans (strain C-125) gi|10176479|dbj|BAB07573.1|
PTS system, mannitol-specific enzyme II, BC component
[Bacillus halodurans]
Length = 468
Score = 35.4 bits (80), Expect = 0.38
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Frame = -1
Query: 297 MVASVKIGVIG----LGVTVGAGLQVWIKALMILDVVFGFIMLEIGTCFKPVVVLSMHCI 130
M+ V+ GV+G +GV VGA + ++I A MI+ + GF++ ++ +P V +
Sbjct: 73 MIYDVRGGVVGAAATMGVVVGADIPMFIGA-MIMGPLGGFLIKKVDQVLQPKVRSGFEML 131
Query: 129 LNNFIC--ICFILSVV 88
+NNF + IL++V
Sbjct: 132 VNNFSAGILAAILAIV 147
>ref|NP_705134.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615379|emb|CAD52370.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1510
Score = 33.1 bits (74), Expect = 1.9
Identities = 20/94 (21%), Positives = 44/94 (46%)
Frame = +1
Query: 85 ANHT*YEADTYKIVQDTMHT*NNHWLKTCTNLKHYKAKNNIQYHQCFNPDLQTCSHCNPK 264
AN T + + + +T + NN+ + N+ H +NNI + + SH N +
Sbjct: 1302 ANDTFLQVQGQRNISNTSNRSNNNHINNRNNISHINNRNNISHIN----NRSNISHINNR 1357
Query: 265 AYYTNLHTCYHNSQV*TRNKEHSFWSILSKPSNS 366
+ ++++ C+++ + +F +IL SN+
Sbjct: 1358 SNISHINNCHYS------DSNDTFKTILKNASNN 1385
>pir||A43932 mucin 2 precursor, intestinal - human (fragments)
Length = 3020
Score = 32.7 bits (73), Expect = 2.5
Identities = 21/65 (32%), Positives = 28/65 (42%), Gaps = 1/65 (1%)
Frame = +2
Query: 140 ILKTTTGLKHVPISSIIKPKTTSNIINALIQTCKPAPTVTPRP-ITPIFTLATIIHKYKP 316
++ TTT + P + K T + I T P PT T P + PI T T+ P
Sbjct: 1972 LITTTTTMTPTPTPTSTKSTTVTPITTTTTVTATPTPTGTQTPTMIPISTTTTVTPTPTP 2031
Query: 317 ETRST 331
T ST
Sbjct: 2032 TTGST 2036
>gb|EAA01891.1| ebiP30 [Anopheles gambiae str. PEST]
Length = 335
Score = 32.7 bits (73), Expect = 2.5
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
Frame = -1
Query: 510 KLRLGVTDYWDVVLGNCHRIPWLYG-YMFGWESHIVGRDSI*ELSWQVM 367
K ++GV+ +W+ +LG+ I G MFGW S +GR I S+ ++
Sbjct: 41 KPQMGVSAFWEGMLGSSALIGLFIGSLMFGWISDYIGRQKIFSFSFIII 89
>gb|AAA36334.1| intestinal mucin
Length = 278
Score = 32.7 bits (73), Expect = 2.5
Identities = 21/65 (32%), Positives = 28/65 (42%), Gaps = 1/65 (1%)
Frame = +2
Query: 140 ILKTTTGLKHVPISSIIKPKTTSNIINALIQTCKPAPTVTPRP-ITPIFTLATIIHKYKP 316
++ TTT + P + K T + I T P PT T P + PI T T+ P
Sbjct: 57 LITTTTTMTPTPTPTSTKSTTVTPITTTTTVTATPTPTGTQTPTMIPISTTTTVTPTPTP 116
Query: 317 ETRST 331
T ST
Sbjct: 117 TTGST 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,838,090
Number of Sequences: 1393205
Number of extensions: 11637186
Number of successful extensions: 30702
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 28871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30631
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
