Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015744A_C01 KMC015744A_c01
(757 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187319.1| unknown protein; protein id: At3g66654.1 [Arabi... 134 2e-30
ref|NP_182254.1| putative peptidyl-prolyl cis-trans isomerase; p... 123 2e-27
gb|AAK91465.1| At2g47320/T8I13.16 [Arabidopsis thaliana] gi|2045... 123 2e-27
ref|NP_190046.2| putative protein; protein id: At3g44600.1, supp... 71 2e-11
pir||T48940 hypothetical protein F14L2.150 - Arabidopsis thalian... 71 2e-11
>ref|NP_187319.1| unknown protein; protein id: At3g66654.1 [Arabidopsis thaliana]
gi|12321915|gb|AAG50994.1|AC036106_7 unknown protein;
32328-30725 [Arabidopsis thaliana]
gi|26450491|dbj|BAC42359.1| unknown protein [Arabidopsis
thaliana] gi|28973051|gb|AAO63850.1| unknown protein
[Arabidopsis thaliana]
Length = 236
Score = 134 bits (336), Expect = 2e-30
Identities = 67/110 (60%), Positives = 81/110 (72%), Gaps = 4/110 (3%)
Frame = -2
Query: 756 RVIKHYVIQAGDGQGTGTTEDWS----LRGKQSTSMKHEAFMLGTSKGKHTNKGFNLFIT 589
RVIK+Y++QAG + E+W+ LRG+ KHEAFMLGT K K NK F L IT
Sbjct: 124 RVIKNYLVQAGHSPSSIPVEEWTAKGKLRGRLHIGPKHEAFMLGTPKNKGNNKDFELLIT 183
Query: 588 TAPIPDLNEKLVVFGQVIKGEDVVQEIEEVDTDEHYNPKISIGILDVTLR 439
TAPIPDLN++L+VFG+V+KGEDVVQEIEEVDTDEH+ PK IGI V L+
Sbjct: 184 TAPIPDLNDQLIVFGRVLKGEDVVQEIEEVDTDEHFQPKSPIGITGVVLK 233
>ref|NP_182254.1| putative peptidyl-prolyl cis-trans isomerase; protein id:
At2g47320.1, supported by cDNA: gi_15215840 [Arabidopsis
thaliana] gi|25409040|pir||G84913 probable
peptidyl-prolyl cis-trans isomerase [imported] -
Arabidopsis thaliana gi|2275210|gb|AAB63832.1| putative
peptidyl-prolyl cis-trans isomerase [Arabidopsis
thaliana]
Length = 230
Score = 123 bits (309), Expect = 2e-27
Identities = 63/108 (58%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Frame = -2
Query: 756 RVIKHYVIQAGDGQGTGTTEDWSLRGKQ-STSMKHEAFMLGTSKGKHTNKGFNLFITTAP 580
RV+KH+VIQAGD +DW+L K TS+KHE FM+GT K K+ GF FI +A
Sbjct: 121 RVVKHFVIQAGDSAEFDAVKDWALDRKNIDTSLKHEEFMVGTPKAKNEQGGFEFFIVSAQ 180
Query: 579 IPDLNEKLVVFGQVIKGEDVVQEIEEVDTDEHYNPKISIGILDVTLRQ 436
I DLNEKL VFG+V KG+DVVQEIEEV+TD+ Y PK I I+ VTL Q
Sbjct: 181 IKDLNEKLTVFGRVSKGQDVVQEIEEVETDDQYQPKSPIEIMSVTLLQ 228
>gb|AAK91465.1| At2g47320/T8I13.16 [Arabidopsis thaliana]
gi|20453257|gb|AAM19867.1| At2g47320/T8I13.16
[Arabidopsis thaliana]
Length = 125
Score = 123 bits (309), Expect = 2e-27
Identities = 63/108 (58%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Frame = -2
Query: 756 RVIKHYVIQAGDGQGTGTTEDWSLRGKQ-STSMKHEAFMLGTSKGKHTNKGFNLFITTAP 580
RV+KH+VIQAGD +DW+L K TS+KHE FM+GT K K+ GF FI +A
Sbjct: 16 RVVKHFVIQAGDSAEFDAVKDWALDRKNIDTSLKHEEFMVGTPKAKNEQGGFEFFIVSAQ 75
Query: 579 IPDLNEKLVVFGQVIKGEDVVQEIEEVDTDEHYNPKISIGILDVTLRQ 436
I DLNEKL VFG+V KG+DVVQEIEEV+TD+ Y PK I I+ VTL Q
Sbjct: 76 IKDLNEKLTVFGRVSKGQDVVQEIEEVETDDQYQPKSPIEIMSVTLLQ 123
>ref|NP_190046.2| putative protein; protein id: At3g44600.1, supported by cDNA:
gi_17065153 [Arabidopsis thaliana]
gi|17065154|gb|AAL32731.1| putative protein [Arabidopsis
thaliana]
Length = 631
Score = 70.9 bits (172), Expect = 2e-11
Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Frame = -2
Query: 756 RVIKHYVIQAGD--GQGTGTTEDWSLRGKQS--TSMKHEA-FMLGTSKGKHTNKGFNLFI 592
RVI+ ++IQ GD G GTG W + S++H+ F L + G FI
Sbjct: 519 RVIRGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFI 578
Query: 591 TTAPIPDLNEKLVVFGQVIKGEDVVQEIEEVDTDEHYNPKISIGILDVTL 442
TT P L+ K VFG+V+KG DVVQ IE+V TD++ P + IL+VT+
Sbjct: 579 TTVATPWLDNKHTVFGRVVKGMDVVQGIEKVKTDKNDRPYQDVKILNVTV 628
>pir||T48940 hypothetical protein F14L2.150 - Arabidopsis thaliana
gi|7635482|emb|CAB88542.1| putative protein [Arabidopsis
thaliana]
Length = 629
Score = 70.9 bits (172), Expect = 2e-11
Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Frame = -2
Query: 756 RVIKHYVIQAGD--GQGTGTTEDWSLRGKQS--TSMKHEA-FMLGTSKGKHTNKGFNLFI 592
RVI+ ++IQ GD G GTG W + S++H+ F L + G FI
Sbjct: 517 RVIRGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFI 576
Query: 591 TTAPIPDLNEKLVVFGQVIKGEDVVQEIEEVDTDEHYNPKISIGILDVTL 442
TT P L+ K VFG+V+KG DVVQ IE+V TD++ P + IL+VT+
Sbjct: 577 TTVATPWLDNKHTVFGRVVKGMDVVQGIEKVKTDKNDRPYQDVKILNVTV 626
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 604,517,104
Number of Sequences: 1393205
Number of extensions: 12646185
Number of successful extensions: 31481
Number of sequences better than 10.0: 443
Number of HSP's better than 10.0 without gapping: 30104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31266
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
