Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015735A_C01 KMC015735A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190333.1| hypothetical protein; protein id: At3g47490.1 [... 243 1e-63
gb|AAL84291.1|AC073556_8 putative endonuclease [Oryza sativa (ja... 243 1e-63
gb|AAM74343.1|AC115686_10 Putative HNH endonuclease [Oryza sativ... 130 2e-29
ref|NP_173303.1| unknown protein; protein id: At1g18680.1 [Arabi... 122 3e-27
ref|NP_661621.1| HNH endonuclease family protein [Chlorobium tep... 41 0.013
>ref|NP_190333.1| hypothetical protein; protein id: At3g47490.1 [Arabidopsis
thaliana] gi|11285571|pir||T45709 hypothetical protein
F1P2.40 - Arabidopsis thaliana
gi|6522532|emb|CAB61975.1| hypothetical protein
[Arabidopsis thaliana]
Length = 234
Score = 243 bits (620), Expect = 1e-63
Identities = 107/134 (79%), Positives = 124/134 (91%)
Frame = -2
Query: 563 YTHPNPNPRSFPHSVKQKCWEKADKIKGRDPDRWRRDPLGNTIFRKLVGCPGCLCHDYDH 384
Y PNP PRSFP+SVKQ+CWEKA+KIKGRDP+RWRRD LGN +FRKLVGCPGCLCHDYDH
Sbjct: 101 YGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYDH 160
Query: 383 IVPYSKGGQSTLENCQVLQATVNRAKGNRTEISRADLMQKSSYCRVSGRDMDLLELSAYG 204
IVPYSKGG+STLENCQVLQA VNR+KGN+T+ISR++L+Q+SSYCRV+GRDMDL+EL+AYG
Sbjct: 161 IVPYSKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTAYG 220
Query: 203 NVRHGPDSGGCRIQ 162
NV+ P S GCRIQ
Sbjct: 221 NVQRAPTSSGCRIQ 234
>gb|AAL84291.1|AC073556_8 putative endonuclease [Oryza sativa (japonica cultivar-group)]
Length = 187
Score = 243 bits (620), Expect = 1e-63
Identities = 109/138 (78%), Positives = 126/138 (90%), Gaps = 5/138 (3%)
Frame = -2
Query: 560 THPNPN-----PRSFPHSVKQKCWEKADKIKGRDPDRWRRDPLGNTIFRKLVGCPGCLCH 396
T P P+ PRSFP+ VKQ+CWEKA+++ GRDP+RWRRD LGN +FRKLVGCPGCLCH
Sbjct: 50 TAPRPSASSSEPRSFPYVVKQRCWEKAERVAGRDPERWRRDALGNVVFRKLVGCPGCLCH 109
Query: 395 DYDHIVPYSKGGQSTLENCQVLQATVNRAKGNRTEISRADLMQKSSYCRVSGRDMDLLEL 216
DYDHIVPYSKGG+STLENCQVLQATVNR+KGN+TE+S+++L+QKS+YCRVSGRDMDLLEL
Sbjct: 110 DYDHIVPYSKGGKSTLENCQVLQATVNRSKGNKTELSKSELIQKSAYCRVSGRDMDLLEL 169
Query: 215 SAYGNVRHGPDSGGCRIQ 162
SAYGNVR GPDSGGCRIQ
Sbjct: 170 SAYGNVRRGPDSGGCRIQ 187
>gb|AAM74343.1|AC115686_10 Putative HNH endonuclease [Oryza sativa (japonica cultivar-group)]
gi|23477807|gb|AAN34947.1| Putative HNH endonuclease
[Oryza sativa (japonica cultivar-group)]
Length = 178
Score = 130 bits (326), Expect = 2e-29
Identities = 54/125 (43%), Positives = 83/125 (66%)
Frame = -2
Query: 542 PRSFPHSVKQKCWEKADKIKGRDPDRWRRDPLGNTIFRKLVGCPGCLCHDYDHIVPYSKG 363
PRSF + CW KA + GR P+RWR+D GN + R+ C GCLC++YDHIVP+SKG
Sbjct: 28 PRSFDEKTRSACWRKAAVVMGRHPERWRQDAAGNVVCRRFWSCHGCLCYEYDHIVPFSKG 87
Query: 362 GQSTLENCQVLQATVNRAKGNRTEISRADLMQKSSYCRVSGRDMDLLELSAYGNVRHGPD 183
G+ST++NCQ+LQ VNR+K ++ I +A++ S + + +++D++E++ YG+V
Sbjct: 88 GESTVDNCQILQTRVNRSKSDKAWIEQAEMQGFSCDIKFTDKELDVIEMAVYGDVIRPGK 147
Query: 182 SGGCR 168
CR
Sbjct: 148 QCRCR 152
>ref|NP_173303.1| unknown protein; protein id: At1g18680.1 [Arabidopsis thaliana]
gi|25513594|pir||E86320 F6A14.21 protein - Arabidopsis
thaliana gi|6730716|gb|AAF27111.1|AC011809_20 Unknown
protein [Arabidopsis thaliana]
gi|26451201|dbj|BAC42704.1| unknown protein [Arabidopsis
thaliana] gi|28973585|gb|AAO64117.1| unknown protein
[Arabidopsis thaliana]
Length = 186
Score = 122 bits (307), Expect = 3e-27
Identities = 52/115 (45%), Positives = 73/115 (63%)
Frame = -2
Query: 542 PRSFPHSVKQKCWEKADKIKGRDPDRWRRDPLGNTIFRKLVGCPGCLCHDYDHIVPYSKG 363
PR F K KCW AD + GR P+RWR+D GN + ++ C GCLC +YDHIVPYSKG
Sbjct: 40 PRFFDGKAKNKCWANADIVPGRHPERWRKDVAGNIVCKRFGNCNGCLCFEYDHIVPYSKG 99
Query: 362 GQSTLENCQVLQATVNRAKGNRTEISRADLMQKSSYCRVSGRDMDLLELSAYGNV 198
G+S ENCQ+LQ VNR K + + L S + + +++D++E++ YG+V
Sbjct: 100 GESIAENCQILQTRVNRFKSAQENVDATTLKSYSCGLQFTDKELDVIEMAVYGDV 154
>ref|NP_661621.1| HNH endonuclease family protein [Chlorobium tepidum TLS]
gi|21646667|gb|AAM71963.1| HNH endonuclease family
protein [Chlorobium tepidum TLS]
Length = 170
Score = 40.8 bits (94), Expect = 0.013
Identities = 24/62 (38%), Positives = 31/62 (49%), Gaps = 4/62 (6%)
Frame = -2
Query: 416 CPGCLCHD----YDHIVPYSKGGQSTLENCQVLQATVNRAKGNRTEISRADLMQKSSYCR 249
C C C D DH++P S+GG+ T EN + N KGNRT S A + + CR
Sbjct: 87 CQYCGCKDGSLTVDHVMPKSRGGEDTWENLITACKSCNTKKGNRTP-SEAGMAMLNKPCR 145
Query: 248 VS 243
S
Sbjct: 146 PS 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,022,704
Number of Sequences: 1393205
Number of extensions: 12066926
Number of successful extensions: 29100
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 28111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29087
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
