Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015731A_C01 KMC015731A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06471 core protein - garden pea gi|1370287|emb|CAA97910.1|... 238 5e-62
emb|CAA09867.1| amino acid selective channel protein [Hordeum vu... 198 3e-50
gb|AAM60853.1| putative membrane channel protein [Arabidopsis th... 176 2e-43
ref|NP_180456.1| putative membrane channel protein; protein id: ... 175 3e-43
gb|AAL23749.1| stress-inducible membrane pore protein [Bromus in... 87 1e-16
>pir||T06471 core protein - garden pea gi|1370287|emb|CAA97910.1| core protein
[Pisum sativum]
Length = 146
Score = 238 bits (606), Expect = 5e-62
Identities = 115/132 (87%), Positives = 125/132 (94%)
Frame = -1
Query: 558 VDVAIDMGNPFLNLTVDGFLKIGAVAATRAAAEDTYHIIKKGSISSNDFQKTLKKMCKEG 379
+DV IDMGNPFLNLTVDGFLKIGAVAATR+ AEDT+HII+KGSISSNDF+K+LKKMCKEG
Sbjct: 15 LDVVIDMGNPFLNLTVDGFLKIGAVAATRSVAEDTFHIIRKGSISSNDFEKSLKKMCKEG 74
Query: 378 AYWGTVAGLYVGMEYGVERIRGRRDWKNAMLGGAVTGALVSAASGDKSDKIAIDAITGAA 199
AYWG +AG+YVGMEYGVERIRG RDWKNAM GGAVTGALVSAAS +K DKIA+DAITGAA
Sbjct: 75 AYWGAIAGVYVGMEYGVERIRGTRDWKNAMFGGAVTGALVSAASNNKKDKIAVDAITGAA 134
Query: 198 IATAAEFINYLT 163
IATAAEFINYLT
Sbjct: 135 IATAAEFINYLT 146
>emb|CAA09867.1| amino acid selective channel protein [Hordeum vulgare subsp.
vulgare]
Length = 144
Score = 198 bits (504), Expect = 3e-50
Identities = 96/132 (72%), Positives = 108/132 (81%)
Frame = -1
Query: 558 VDVAIDMGNPFLNLTVDGFLKIGAVAATRAAAEDTYHIIKKGSISSNDFQKTLKKMCKEG 379
VDVAID+GNP LN TVDGFLKIGAV A R AED + + +G IS ++TLKKMCKEG
Sbjct: 13 VDVAIDLGNPLLNRTVDGFLKIGAVGACRVVAEDAFDCLHRGDISKRQLEETLKKMCKEG 72
Query: 378 AYWGTVAGLYVGMEYGVERIRGRRDWKNAMLGGAVTGALVSAASGDKSDKIAIDAITGAA 199
AYWG VAG+YVGMEYGVER+RG RDWKNA++GG TGALVSAAS +K +KIA DAITG A
Sbjct: 73 AYWGAVAGVYVGMEYGVERVRGDRDWKNALIGGIATGALVSAASNNKGNKIAQDAITGGA 132
Query: 198 IATAAEFINYLT 163
IATA EFINYLT
Sbjct: 133 IATAVEFINYLT 144
>gb|AAM60853.1| putative membrane channel protein [Arabidopsis thaliana]
Length = 148
Score = 176 bits (446), Expect = 2e-43
Identities = 81/129 (62%), Positives = 99/129 (75%)
Frame = -1
Query: 558 VDVAIDMGNPFLNLTVDGFLKIGAVAATRAAAEDTYHIIKKGSISSNDFQKTLKKMCKEG 379
+ VA+DMGNPFLNLTVD FLKIGAV T++ AEDTY I+KGS+S + + LKK+CKEG
Sbjct: 15 LSVAVDMGNPFLNLTVDAFLKIGAVGVTKSLAEDTYKAIEKGSLSKSTLEHALKKLCKEG 74
Query: 378 AYWGTVAGLYVGMEYGVERIRGRRDWKNAMLGGAVTGALVSAASGDKSDKIAIDAITGAA 199
YWG G+Y+G EYG+ERIRG RDWKNAML GA TGA++SA D I IDAI G A
Sbjct: 75 VYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKKGKDTIVIDAILGGA 134
Query: 198 IATAAEFIN 172
+ATA++F+N
Sbjct: 135 LATASQFVN 143
>ref|NP_180456.1| putative membrane channel protein; protein id: At2g28900.1,
supported by cDNA: 10159., supported by cDNA:
gi_15010583, supported by cDNA: gi_20147376 [Arabidopsis
thaliana] gi|25354609|pir||C84690 probable membrane
channel protein [imported] - Arabidopsis thaliana
gi|3927837|gb|AAC79594.1| putative membrane channel
protein [Arabidopsis thaliana]
gi|15010584|gb|AAK73951.1| At2g28900/F8N16.19
[Arabidopsis thaliana] gi|20147377|gb|AAM10398.1|
At2g28900/F8N16.19 [Arabidopsis thaliana]
Length = 148
Score = 175 bits (444), Expect = 3e-43
Identities = 81/129 (62%), Positives = 98/129 (75%)
Frame = -1
Query: 558 VDVAIDMGNPFLNLTVDGFLKIGAVAATRAAAEDTYHIIKKGSISSNDFQKTLKKMCKEG 379
+ VA+DMGNPFLNLTVD FLKIGAV T++ AEDTY I KGS+S + + LKK+CKEG
Sbjct: 15 LSVAVDMGNPFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSKSTLEHALKKLCKEG 74
Query: 378 AYWGTVAGLYVGMEYGVERIRGRRDWKNAMLGGAVTGALVSAASGDKSDKIAIDAITGAA 199
YWG G+Y+G EYG+ERIRG RDWKNAML GA TGA++SA D I IDAI G A
Sbjct: 75 VYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKKGKDTIVIDAILGGA 134
Query: 198 IATAAEFIN 172
+ATA++F+N
Sbjct: 135 LATASQFVN 143
>gb|AAL23749.1| stress-inducible membrane pore protein [Bromus inermis]
Length = 157
Score = 87.4 bits (215), Expect = 1e-16
Identities = 51/149 (34%), Positives = 76/149 (50%), Gaps = 24/149 (16%)
Frame = -1
Query: 546 IDMGNPFLNLTVDGFLKIGAVAATRAAAEDTYHIIKKG------SISSN----------- 418
+D+G+P LN D F++ V A RA + + Y + +G + SN
Sbjct: 7 LDLGHPLLNRVADSFIRAAGVGAARAVSREAYFVTVEGMGGDSTGLDSNAKRSHFSSARG 66
Query: 417 -----DFQKTLKKMCKEGAYWGTVAGLYVGMEYGVERIRGRRDWKNAMLGGAVTGALVSA 253
F+ +K KE WG AG+Y G+ YG+ RG DWKN+ + GA+ GA V A
Sbjct: 67 DDGQKSFEVVVKSAGKEAFQWGLAAGVYSGLTYGLREARGCHDWKNSAIAGALAGAAV-A 125
Query: 252 ASGDK--SDKIAIDAITGAAIATAAEFIN 172
+GD SD + AITGAA+++AA ++
Sbjct: 126 LTGDNGHSDHVVHFAITGAALSSAATMLS 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,405,613
Number of Sequences: 1393205
Number of extensions: 11162813
Number of successful extensions: 34948
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 33402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34827
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
