Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015721A_C01 KMC015721A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P16149|RS16_LUPPO 40S RIBOSOMAL PROTEIN S16 gi|70921|pir||R3Y... 201 6e-51
gb|AAF34799.1|AF227979_1 40S ribosomal protein S16 [Euphorbia es... 194 7e-49
sp|Q9XEK7|RS16_TORRU 40S ribosomal protein S16 gi|4574242|gb|AAD... 192 3e-48
ref|NP_178826.1| 40S ribosomal protein S16; protein id: At2g0999... 192 3e-48
ref|NP_197339.1| 40S RIBOSOMAL PROTEIN S16; protein id: At5g1838... 192 4e-48
>sp|P16149|RS16_LUPPO 40S RIBOSOMAL PROTEIN S16 gi|70921|pir||R3YL16 ribosomal protein
S16, cytosolic - large-leaved lupine
gi|19512|emb|CAA36068.1| rps16 gene product (AA 1-145)
[Lupinus polyphyllus]
Length = 145
Score = 201 bits (512), Expect = 6e-51
Identities = 100/102 (98%), Positives = 102/102 (99%)
Frame = -3
Query: 663 EILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQS 484
EILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQS
Sbjct: 44 EILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQS 103
Query: 483 KKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 358
KKEIKDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 104 KKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145
>gb|AAF34799.1|AF227979_1 40S ribosomal protein S16 [Euphorbia esula]
Length = 144
Score = 194 bits (494), Expect = 7e-49
Identities = 95/102 (93%), Positives = 101/102 (98%)
Frame = -3
Query: 663 EILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQS 484
EILRFKA+EPILLLG+ RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVA+YQK+VDEQS
Sbjct: 43 EILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKFVDEQS 102
Query: 483 KKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 358
KKEIKDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 103 KKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 144
>sp|Q9XEK7|RS16_TORRU 40S ribosomal protein S16 gi|4574242|gb|AAD23965.1|AF108725_1
ribosomal protein S16 [Tortula ruralis]
Length = 142
Score = 192 bits (489), Expect = 3e-48
Identities = 93/102 (91%), Positives = 102/102 (99%)
Frame = -3
Query: 663 EILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQS 484
EILR+KAFEP+LLLG+S+FAGVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQS
Sbjct: 41 EILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQS 100
Query: 483 KKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 358
KKEIKD+L+RYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR
Sbjct: 101 KKEIKDVLLRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 142
>ref|NP_178826.1| 40S ribosomal protein S16; protein id: At2g09990.1, supported by
cDNA: 29241., supported by cDNA: gi_13926207
[Arabidopsis thaliana] gi|25294609|pir||E84489 40S
ribosomal protein S16 [imported] - Arabidopsis thaliana
gi|4558679|gb|AAD22696.1| 40S ribosomal protein S16
[Arabidopsis thaliana]
gi|13926208|gb|AAK49582.1|AF370576_1 40S ribosomal
protein S16 [Arabidopsis thaliana]
gi|21555842|gb|AAM63947.1| 40S ribosomal protein S16
[Arabidopsis thaliana]
Length = 146
Score = 192 bits (488), Expect = 3e-48
Identities = 94/102 (92%), Positives = 99/102 (96%)
Frame = -3
Query: 663 EILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQS 484
EILRFK FEPILLLGK RFAGV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQS
Sbjct: 45 EILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQS 104
Query: 483 KKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 358
KKEIKDIL+RYDRTLLVADPRRCEPKKFGGRGARSR+QKSYR
Sbjct: 105 KKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
>ref|NP_197339.1| 40S RIBOSOMAL PROTEIN S16; protein id: At5g18380.1, supported by
cDNA: gi_13877830, supported by cDNA: gi_16323499
[Arabidopsis thaliana] gi|2500430|sp|Q42340|RS16_ARATH
40S ribosomal protein S16
gi|13877831|gb|AAK43993.1|AF370178_1 putative 40S
ribosomal protein S16 [Arabidopsis thaliana]
gi|16323500|gb|AAL15244.1| putative 40S ribosomal
protein S16 [Arabidopsis thaliana]
Length = 146
Score = 192 bits (487), Expect = 4e-48
Identities = 93/102 (91%), Positives = 99/102 (96%)
Frame = -3
Query: 663 EILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQS 484
EILRFK FEP+LLLGK RFAGV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQS
Sbjct: 45 EILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQS 104
Query: 483 KKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 358
KKEIKDIL+RYDRTLLVADPRRCEPKKFGGRGARSR+QKSYR
Sbjct: 105 KKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 580,479,296
Number of Sequences: 1393205
Number of extensions: 12690296
Number of successful extensions: 54095
Number of sequences better than 10.0: 236
Number of HSP's better than 10.0 without gapping: 42880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52080
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
