Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015703A_C01 KMC015703A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98171.1| RAB7D [Lotus japonicus] 117 2e-42
dbj|BAA76423.1| rab-type small GTP-binding protein [Cicer arieti... 117 1e-41
sp|O24461|RAB7_PRUAR Ras-related protein Rab7 gi|2317874|gb|AAB7... 114 4e-39
sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 gi|4545231|gb|AAD2... 113 8e-38
pir||T03628 GTP-binding protein Rab7a - common tobacco gi|623588... 114 1e-35
>emb|CAA98171.1| RAB7D [Lotus japonicus]
Length = 207
Score = 117 bits (294), Expect(2) = 2e-42
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = -1
Query: 576 PFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAK 409
PFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAK
Sbjct: 119 PFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAK 174
Score = 76.6 bits (187), Expect(2) = 2e-42
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = -2
Query: 410 KNALKNEPEEEMYLPDTIDVGGGGRQQRSTGCEC 309
KNALKNEPEEEMYLPDTIDVGGGGRQQRSTGCEC
Sbjct: 174 KNALKNEPEEEMYLPDTIDVGGGGRQQRSTGCEC 207
>dbj|BAA76423.1| rab-type small GTP-binding protein [Cicer arietinum]
Length = 119
Score = 117 bits (294), Expect(2) = 1e-41
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = -1
Query: 576 PFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAK 409
PFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAK
Sbjct: 31 PFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAK 86
Score = 74.3 bits (181), Expect(2) = 1e-41
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = -2
Query: 410 KNALKNEPEEEMYLPDTIDVGGGGRQQRSTGCEC 309
KNALKNEPEEEMYLPDTIDVG GGRQQRSTGCEC
Sbjct: 86 KNALKNEPEEEMYLPDTIDVGSGGRQQRSTGCEC 119
>sp|O24461|RAB7_PRUAR Ras-related protein Rab7 gi|2317874|gb|AAB71504.1| Rab7 GTP binding
protein [Prunus armeniaca]
Length = 207
Score = 114 bits (284), Expect(2) = 4e-39
Identities = 53/56 (94%), Positives = 55/56 (97%)
Frame = -1
Query: 576 PFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAK 409
PFVVLGNKIDVDGGNSRV+SEKKAKAWCASKGNIPYFETSAKEGFNV+ AFQCIAK
Sbjct: 119 PFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAK 174
Score = 69.3 bits (168), Expect(2) = 4e-39
Identities = 30/34 (88%), Positives = 32/34 (93%)
Frame = -2
Query: 410 KNALKNEPEEEMYLPDTIDVGGGGRQQRSTGCEC 309
KNAL NEPEEE+YLPDTIDV GGGRQQRS+GCEC
Sbjct: 174 KNALNNEPEEEIYLPDTIDVAGGGRQQRSSGCEC 207
>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 gi|4545231|gb|AAD22451.1|AF116243_1
RAS-related GTP-binding protein [Gossypium hirsutum]
Length = 207
Score = 113 bits (283), Expect(2) = 8e-38
Identities = 51/56 (91%), Positives = 56/56 (99%)
Frame = -1
Query: 576 PFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAK 409
PFVVLGNK+DVDGGNSRV+SEKKAKAWCASKGNIPYFETSAKEGFNV+AAF+CIA+
Sbjct: 119 PFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIAR 174
Score = 65.5 bits (158), Expect(2) = 8e-38
Identities = 28/34 (82%), Positives = 31/34 (90%)
Frame = -2
Query: 410 KNALKNEPEEEMYLPDTIDVGGGGRQQRSTGCEC 309
+NALKNEPEEE+YLP+TIDV GGR QRSTGCEC
Sbjct: 174 RNALKNEPEEEIYLPETIDVASGGRPQRSTGCEC 207
>pir||T03628 GTP-binding protein Rab7a - common tobacco gi|623588|gb|AAA74118.1|
putative
Length = 206
Score = 114 bits (285), Expect(2) = 1e-35
Identities = 52/56 (92%), Positives = 55/56 (97%)
Frame = -1
Query: 576 PFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAK 409
PF+VLGNKIDVDGGNSRV+SEKK KAWCASKGNIPYFETSAKEGFNV+AAFQCIAK
Sbjct: 119 PFIVLGNKIDVDGGNSRVVSEKKVKAWCASKGNIPYFETSAKEGFNVDAAFQCIAK 174
Score = 57.4 bits (137), Expect(2) = 1e-35
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = -2
Query: 410 KNALKNEPEEEMYLPDTIDVGGGGRQQRSTGCE 312
KNALKNEPE+E+YLPDTIDV GG Q RSTGCE
Sbjct: 174 KNALKNEPEDEIYLPDTIDVAGGS-QSRSTGCE 205
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,159,942
Number of Sequences: 1393205
Number of extensions: 11184185
Number of successful extensions: 26433
Number of sequences better than 10.0: 883
Number of HSP's better than 10.0 without gapping: 25491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26283
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
