KMC015685A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC015685A_C01 KMC015685A_c01
tttgaaatcaatAGACTTAAAGAAGATAATAGCTAGTATCCACAATTGTTATTTGAGTGG
TACCAAGTGGAAATACAATGAGAATTAACAACTGCACACACACAATCTCTGAAGAATGAG
CTCAGTTTGATACCATCGATCTTGATATTTTAGGAACACTGTTTTATTTAGAGAGAGGGG
TTCCAGAGCAAGATATGGAATGGAATCAAGATGGCTCAGATCAGAACTTCTTAATAAATT
CATAAATGTGATTGCTCACATCCTCTGCTGCTTCTTGGTTGTTGAAGTGTGCTACCCCTT
CCTGCACAACCACTTCCTCCAAACTTGGCACATCTTTCTTAAACCCACCATTGTGGATAT
AGTCCCTCATCTCTGAGGAACCGTATGACAAGTCAACATTCCCTACAATGAACTTCACCG
GCACACCGGTGATACCTACTCCAGTCCAA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015685A_C01 KMC015685A_c01
(449 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD31713.1| epoxide hydrolase [Cicer arietinum] 113 6e-25
emb|CAA55294.1| epoxide hydrolase [Glycine max] 106 7e-23
pir||T07145 epoxide hydrolase homolog - soybean gi|1304227|dbj|B... 106 7e-23
gb|AAA81891.1| epoxide hydrolase 97 4e-20
gb|AAM28292.1| epoxide hydrolase [Ananas comosus] 97 6e-20
>emb|CAD31713.1| epoxide hydrolase [Cicer arietinum]
Length = 275
Score = 113 bits (282), Expect = 6e-25
Identities = 52/75 (69%), Positives = 63/75 (83%)
Frame = -2
Query: 448 WTGVGITGVPVKFIVGNVDLSYGSSEMRDYIHNGGFKKDVPSLEEVVVQEGVAHFNNQEA 269
W G + VPVKFI G +D+ Y S M++YIH GGFK+DVP+LEEV+VQ+GVAHFNNQEA
Sbjct: 202 WRGAKVY-VPVKFITGELDMVYTSLNMKEYIHGGGFKEDVPNLEEVIVQKGVAHFNNQEA 260
Query: 268 AEDVSNHIYEFIKKF 224
AE++SNHIYEFIKKF
Sbjct: 261 AEEISNHIYEFIKKF 275
>emb|CAA55294.1| epoxide hydrolase [Glycine max]
Length = 341
Score = 106 bits (264), Expect = 7e-23
Identities = 47/75 (62%), Positives = 62/75 (82%)
Frame = -2
Query: 448 WTGVGITGVPVKFIVGNVDLSYGSSEMRDYIHNGGFKKDVPSLEEVVVQEGVAHFNNQEA 269
WTG G VPVK+I G +D+ Y S +++YIH GGFK+DVP+LE+V+VQ+GVAHFNNQEA
Sbjct: 268 WTG-GQIKVPVKYITGELDMVYNSLNLKEYIHGGGFKQDVPNLEQVIVQKGVAHFNNQEA 326
Query: 268 AEDVSNHIYEFIKKF 224
AE++ N+IY+FI KF
Sbjct: 327 AEEIDNYIYDFINKF 341
>pir||T07145 epoxide hydrolase homolog - soybean gi|1304227|dbj|BAA09852.1|
Epoxide hydrolase [Glycine max]
gi|2764804|emb|CAA55293.1| epoxide hydrolase [Glycine
max]
Length = 341
Score = 106 bits (264), Expect = 7e-23
Identities = 47/75 (62%), Positives = 62/75 (82%)
Frame = -2
Query: 448 WTGVGITGVPVKFIVGNVDLSYGSSEMRDYIHNGGFKKDVPSLEEVVVQEGVAHFNNQEA 269
WTG G VPVK+I G +D+ Y S +++YIH GGFK+DVP+LE+V+VQ+GVAHFNNQEA
Sbjct: 268 WTG-GQIKVPVKYITGELDMVYNSLNLKEYIHGGGFKQDVPNLEQVIVQKGVAHFNNQEA 326
Query: 268 AEDVSNHIYEFIKKF 224
AE++ N+IY+FI KF
Sbjct: 327 AEEIDNYIYDFINKF 341
>gb|AAA81891.1| epoxide hydrolase
Length = 321
Score = 97.1 bits (240), Expect = 4e-20
Identities = 47/75 (62%), Positives = 54/75 (71%)
Frame = -2
Query: 448 WTGVGITGVPVKFIVGNVDLSYGSSEMRDYIHNGGFKKDVPSLEEVVVQEGVAHFNNQEA 269
WTG + VP KFIVG DL Y ++YIHNGGFKKDVP LEEVVV EG AHF NQE
Sbjct: 248 WTGAQVK-VPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVNQER 306
Query: 268 AEDVSNHIYEFIKKF 224
++S HIY+FI+KF
Sbjct: 307 PHEISKHIYDFIQKF 321
>gb|AAM28292.1| epoxide hydrolase [Ananas comosus]
Length = 318
Score = 96.7 bits (239), Expect = 6e-20
Identities = 47/75 (62%), Positives = 56/75 (74%)
Frame = -2
Query: 448 WTGVGITGVPVKFIVGNVDLSYGSSEMRDYIHNGGFKKDVPSLEEVVVQEGVAHFNNQEA 269
W G I VP KFIVG++DL+Y ++DYIH GGFK +VP LEEVVV EGV HF QE
Sbjct: 245 WAGAKIQ-VPTKFIVGDLDLTYHYPNIQDYIHKGGFKNEVPLLEEVVVLEGVGHFIQQER 303
Query: 268 AEDVSNHIYEFIKKF 224
AE+V++HIY FIKKF
Sbjct: 304 AEEVTDHIYNFIKKF 318
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,880,724
Number of Sequences: 1393205
Number of extensions: 8765719
Number of successful extensions: 21049
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 20546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21038
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MWM138h05_f |
AV766893 |
1 |
263 |
2 |
SPD038f01_f |
BP047034 |
13 |
449 |
|
Lotus japonicus
Kazusa DNA Research Institute