KMC015685A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC015685A_C01 KMC015685A_c01
tttgaaatcaatAGACTTAAAGAAGATAATAGCTAGTATCCACAATTGTTATTTGAGTGG
TACCAAGTGGAAATACAATGAGAATTAACAACTGCACACACACAATCTCTGAAGAATGAG
CTCAGTTTGATACCATCGATCTTGATATTTTAGGAACACTGTTTTATTTAGAGAGAGGGG
TTCCAGAGCAAGATATGGAATGGAATCAAGATGGCTCAGATCAGAACTTCTTAATAAATT
CATAAATGTGATTGCTCACATCCTCTGCTGCTTCTTGGTTGTTGAAGTGTGCTACCCCTT
CCTGCACAACCACTTCCTCCAAACTTGGCACATCTTTCTTAAACCCACCATTGTGGATAT
AGTCCCTCATCTCTGAGGAACCGTATGACAAGTCAACATTCCCTACAATGAACTTCACCG
GCACACCGGTGATACCTACTCCAGTCCAA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC015685A_C01 KMC015685A_c01
         (449 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD31713.1| epoxide hydrolase [Cicer arietinum]                   113  6e-25
emb|CAA55294.1| epoxide hydrolase [Glycine max]                       106  7e-23
pir||T07145 epoxide hydrolase homolog - soybean gi|1304227|dbj|B...   106  7e-23
gb|AAA81891.1| epoxide hydrolase                                       97  4e-20
gb|AAM28292.1| epoxide hydrolase [Ananas comosus]                      97  6e-20

>emb|CAD31713.1| epoxide hydrolase [Cicer arietinum]
          Length = 275

 Score =  113 bits (282), Expect = 6e-25
 Identities = 52/75 (69%), Positives = 63/75 (83%)
 Frame = -2

Query: 448 WTGVGITGVPVKFIVGNVDLSYGSSEMRDYIHNGGFKKDVPSLEEVVVQEGVAHFNNQEA 269
           W G  +  VPVKFI G +D+ Y S  M++YIH GGFK+DVP+LEEV+VQ+GVAHFNNQEA
Sbjct: 202 WRGAKVY-VPVKFITGELDMVYTSLNMKEYIHGGGFKEDVPNLEEVIVQKGVAHFNNQEA 260

Query: 268 AEDVSNHIYEFIKKF 224
           AE++SNHIYEFIKKF
Sbjct: 261 AEEISNHIYEFIKKF 275

>emb|CAA55294.1| epoxide hydrolase [Glycine max]
          Length = 341

 Score =  106 bits (264), Expect = 7e-23
 Identities = 47/75 (62%), Positives = 62/75 (82%)
 Frame = -2

Query: 448 WTGVGITGVPVKFIVGNVDLSYGSSEMRDYIHNGGFKKDVPSLEEVVVQEGVAHFNNQEA 269
           WTG G   VPVK+I G +D+ Y S  +++YIH GGFK+DVP+LE+V+VQ+GVAHFNNQEA
Sbjct: 268 WTG-GQIKVPVKYITGELDMVYNSLNLKEYIHGGGFKQDVPNLEQVIVQKGVAHFNNQEA 326

Query: 268 AEDVSNHIYEFIKKF 224
           AE++ N+IY+FI KF
Sbjct: 327 AEEIDNYIYDFINKF 341

>pir||T07145 epoxide hydrolase homolog - soybean gi|1304227|dbj|BAA09852.1|
           Epoxide hydrolase [Glycine max]
           gi|2764804|emb|CAA55293.1| epoxide hydrolase [Glycine
           max]
          Length = 341

 Score =  106 bits (264), Expect = 7e-23
 Identities = 47/75 (62%), Positives = 62/75 (82%)
 Frame = -2

Query: 448 WTGVGITGVPVKFIVGNVDLSYGSSEMRDYIHNGGFKKDVPSLEEVVVQEGVAHFNNQEA 269
           WTG G   VPVK+I G +D+ Y S  +++YIH GGFK+DVP+LE+V+VQ+GVAHFNNQEA
Sbjct: 268 WTG-GQIKVPVKYITGELDMVYNSLNLKEYIHGGGFKQDVPNLEQVIVQKGVAHFNNQEA 326

Query: 268 AEDVSNHIYEFIKKF 224
           AE++ N+IY+FI KF
Sbjct: 327 AEEIDNYIYDFINKF 341

>gb|AAA81891.1| epoxide hydrolase
          Length = 321

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 47/75 (62%), Positives = 54/75 (71%)
 Frame = -2

Query: 448 WTGVGITGVPVKFIVGNVDLSYGSSEMRDYIHNGGFKKDVPSLEEVVVQEGVAHFNNQEA 269
           WTG  +  VP KFIVG  DL Y     ++YIHNGGFKKDVP LEEVVV EG AHF NQE 
Sbjct: 248 WTGAQVK-VPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVNQER 306

Query: 268 AEDVSNHIYEFIKKF 224
             ++S HIY+FI+KF
Sbjct: 307 PHEISKHIYDFIQKF 321

>gb|AAM28292.1| epoxide hydrolase [Ananas comosus]
          Length = 318

 Score = 96.7 bits (239), Expect = 6e-20
 Identities = 47/75 (62%), Positives = 56/75 (74%)
 Frame = -2

Query: 448 WTGVGITGVPVKFIVGNVDLSYGSSEMRDYIHNGGFKKDVPSLEEVVVQEGVAHFNNQEA 269
           W G  I  VP KFIVG++DL+Y    ++DYIH GGFK +VP LEEVVV EGV HF  QE 
Sbjct: 245 WAGAKIQ-VPTKFIVGDLDLTYHYPNIQDYIHKGGFKNEVPLLEEVVVLEGVGHFIQQER 303

Query: 268 AEDVSNHIYEFIKKF 224
           AE+V++HIY FIKKF
Sbjct: 304 AEEVTDHIYNFIKKF 318

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,880,724
Number of Sequences: 1393205
Number of extensions: 8765719
Number of successful extensions: 21049
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 20546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21038
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MWM138h05_f AV766893 1 263
2 SPD038f01_f BP047034 13 449




Lotus japonicus
Kazusa DNA Research Institute