Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015669A_C01 KMC015669A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T43045 retrovirus-related gag polyprotein homolog - Mediter... 32 5.0
gb|EAA02550.1| ebiP104 [Anopheles gambiae str. PEST] 32 8.5
>pir||T43045 retrovirus-related gag polyprotein homolog - Mediterranean fruit
fly retrotransposon yoyo gi|1402847|gb|AAC28742.1|
gag-like protein [Ceratitis capitata]
Length = 470
Score = 32.3 bits (72), Expect = 5.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +3
Query: 468 PCPACSIEHLFQKFLVQVDSVAFQIEP----RRHLQFEKHQHQHHPVTESQ 608
P P +I H Q F Q+ + I P +H Q+ +HQ+Q+HP + Q
Sbjct: 299 PIPQRNINHNNQPFYPQLAHIPQAINPINRFSQHPQYRQHQYQYHPQYQYQ 349
>gb|EAA02550.1| ebiP104 [Anopheles gambiae str. PEST]
Length = 132
Score = 31.6 bits (70), Expect = 8.5
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 2/58 (3%)
Frame = +3
Query: 330 FCTVWGDNTNNT-SGPS-QWTC*FILFEGIESDSTIHDDDCARENLHLPCPACSIEHL 497
+CT++G N PS Q++ F+ FEG S +H +LHLP P + HL
Sbjct: 20 YCTLFGGQANERYHNPSKQFSSYFVRFEGGASLELMHTPILFPADLHLPHPLQGLAHL 77
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,033,504
Number of Sequences: 1393205
Number of extensions: 10253072
Number of successful extensions: 22218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22129
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
