Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015636A_C01 KMC015636A_c01
(711 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL09401.1|AF307336_1 ribosomal protein [Petunia x hybrida] 321 5e-87
ref|NP_176910.1| ribosomal protein, putative; protein id: At1g67... 320 2e-86
ref|NP_174060.1| putative 60S ribosomal protein L17; protein id:... 317 8e-86
gb|AAG49551.1|AF264022_1 ribosomal protein L17-1 [Poa secunda] 303 1e-81
pir||S32578 ribosomal protein L17.1, cytosolic - barley 302 3e-81
>gb|AAL09401.1|AF307336_1 ribosomal protein [Petunia x hybrida]
Length = 175
Score = 321 bits (823), Expect = 5e-87
Identities = 157/173 (90%), Positives = 163/173 (93%)
Frame = +3
Query: 6 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 185
MVKYSREP+NPTKSCKARGSDLRVHFKNTRETAHALRK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1 MVKYSREPENPTKSCKARGSDLRVHFKNTRETAHALRKMPLGKAKRYLEDVLAHKQAIPF 60
Query: 186 RRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALHISHIQV 365
RFCRGVGRTAQAKNRHSNGQGRWP KSA FILDLLKNAESNAEVKGLDVD+L+ISHIQV
Sbjct: 61 TRFCRGVGRTAQAKNRHSNGQGRWPVKSANFILDLLKNAESNAEVKGLDVDSLYISHIQV 120
Query: 366 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPEAQLATSKRVA 524
NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEE V+KEPE QLA K A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEESVRKEPETQLAPRKTKA 173
>ref|NP_176910.1| ribosomal protein, putative; protein id: At1g67430.1, supported by
cDNA: gi_14596148, supported by cDNA: gi_20148390
[Arabidopsis thaliana] gi|27735241|sp|P51413|R172_ARATH
60S ribosomal protein L17-2 gi|7440980|pir||T02163
ribosomal protein L17, cytosolic - Arabidopsis thaliana
gi|3176668|gb|AAC18792.1|AAC18792 Similar to ribosomal
protein L17 gb|X62724 from Hordeum vulgare. ESTs
gb|Z34728, gb|F19974, gb|T75677 and gb|Z33937 come from
this gene. [Arabidopsis thaliana]
gi|14596149|gb|AAK68802.1| ribosomal protein L17-like
protein [Arabidopsis thaliana]
gi|20148391|gb|AAM10086.1| unknown protein [Arabidopsis
thaliana]
Length = 175
Score = 320 bits (819), Expect = 2e-86
Identities = 155/171 (90%), Positives = 162/171 (94%)
Frame = +3
Query: 6 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 185
MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60
Query: 186 RRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALHISHIQV 365
RFCRGVGRTAQAKNRHSNGQGRWPAKSA+F+LDLLKNAESNAEVKGLDVDAL ISHIQV
Sbjct: 61 TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120
Query: 366 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPEAQLATSKR 518
NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPE QLA +
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSK 171
>ref|NP_174060.1| putative 60S ribosomal protein L17; protein id: At1g27400.1,
supported by cDNA: 749., supported by cDNA: gi_14335139,
supported by cDNA: gi_16226208, supported by cDNA:
gi_16226629, supported by cDNA: gi_18655346 [Arabidopsis
thaliana] gi|27734446|sp|Q93VI3|R171_ARATH 60S ribosomal
protein L17-1 gi|14335140|gb|AAK59850.1|
At1g27400/F17L21_20 [Arabidopsis thaliana]
gi|16226209|gb|AAL16103.1|AF428271_1 At1g27400/F17L21_20
[Arabidopsis thaliana]
gi|16226630|gb|AAL16218.1|AF428449_1 At1g27400/F17L21_20
[Arabidopsis thaliana] gi|18655347|gb|AAL76129.1|
At1g27400/F17L21_20 [Arabidopsis thaliana]
gi|21594923|gb|AAM66056.1| putative 60S ribosomal
protein L17 [Arabidopsis thaliana]
Length = 176
Score = 317 bits (813), Expect = 8e-86
Identities = 154/171 (90%), Positives = 162/171 (94%)
Frame = +3
Query: 6 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 185
MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60
Query: 186 RRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALHISHIQV 365
RFCRGVGRTAQAKNRHSNGQGRWPAKSA+F+LDLLKNAESNAEVKGLDVDAL ISHIQV
Sbjct: 61 TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120
Query: 366 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPEAQLATSKR 518
NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPE QLA +
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSK 171
>gb|AAG49551.1|AF264022_1 ribosomal protein L17-1 [Poa secunda]
Length = 171
Score = 303 bits (777), Expect = 1e-81
Identities = 149/170 (87%), Positives = 158/170 (92%)
Frame = +3
Query: 6 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 185
MVKYS +P NPTKS KA G DLRVHFKNTRETA ALRK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1 MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60
Query: 186 RRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALHISHIQV 365
RR+CRGVGRTAQAKNR NGQGRWPAKSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct: 61 RRYCRGVGRTAQAKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALYISHIQV 120
Query: 366 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPEAQLATSK 515
NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+Q+A K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESQIAPRK 170
>pir||S32578 ribosomal protein L17.1, cytosolic - barley
Length = 170
Score = 302 bits (774), Expect = 3e-81
Identities = 148/167 (88%), Positives = 156/167 (92%)
Frame = +3
Query: 6 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 185
MVKYS +P NPTKS KA G DLRVHFKNTRETA ALRK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1 MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60
Query: 186 RRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALHISHIQV 365
RR+CRGVGRTAQ KNR NGQGRWPAKSAKF+LDLLKNAESNAEVKGLDVDAL+ISHIQV
Sbjct: 61 RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120
Query: 366 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPEAQLA 506
NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+Q+A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESQIA 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,083,966
Number of Sequences: 1393205
Number of extensions: 13598161
Number of successful extensions: 35987
Number of sequences better than 10.0: 271
Number of HSP's better than 10.0 without gapping: 34460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35862
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
