Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015599A_C01 KMC015599A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172743.1| peroxisomal targeting signal type 2 receptor; p... 60 1e-08
ref|XP_086503.1| hypothetical protein XP_086503 [Homo sapiens] 35 0.51
ref|XP_236068.1| similar to olfactory receptor MOR170-11 [Mus mu... 34 1.5
sp|O02769|ML1A_BOVIN MELATONIN RECEPTOR TYPE 1A (MEL-1A-R) gi|21... 33 3.3
gb|AAH16887.1| Unknown (protein for MGC:18401) [Mus musculus] 33 3.3
>ref|NP_172743.1| peroxisomal targeting signal type 2 receptor; protein id:
At1g12830.1, supported by cDNA: gi_15215675 [Arabidopsis
thaliana] gi|25513675|pir||G86261 F13K23.8 protein -
Arabidopsis thaliana gi|8698730|gb|AAF78488.1|AC012187_8
ESTs gb|Z18526, gb|AI994480, gb|T44186, gb|Z30806 come
from this gene. [Arabidopsis thaliana]
Length = 213
Score = 60.5 bits (145), Expect = 1e-08
Identities = 28/36 (77%), Positives = 33/36 (90%)
Frame = -2
Query: 571 DSDFSDDPLAEVDLNNILPSRTRRRAAQPGVRIARD 464
+SDFSDDPLAEVDL+NILPSRTRRR++QPGV I +
Sbjct: 160 ESDFSDDPLAEVDLDNILPSRTRRRSSQPGVFIPNE 195
>ref|XP_086503.1| hypothetical protein XP_086503 [Homo sapiens]
Length = 94
Score = 35.4 bits (80), Expect = 0.51
Identities = 18/49 (36%), Positives = 26/49 (52%)
Frame = -3
Query: 285 FSSFCYLFFWAYPVHVKTRKPFFAPKVWPGGFAQVYGNLLIS*LVFFVC 139
F S C + +P+ KT+KPFF P PG + + LL S +F +C
Sbjct: 16 FLSHCPKLGFPHPLKNKTKKPFFTPNCPPGVWFWSFSLLLASCYMFCIC 64
>ref|XP_236068.1| similar to olfactory receptor MOR170-11 [Mus musculus] [Rattus
norvegicus]
Length = 163
Score = 33.9 bits (76), Expect = 1.5
Identities = 31/115 (26%), Positives = 46/115 (39%), Gaps = 1/115 (0%)
Frame = -2
Query: 352 GCAIRTVHCWRDANVLSHKVIYFFFLLLLIFLGLSRSCKD*KAFLCSQGLARRICSSLWK 173
GC IR C D+N+++H + F LL L CS A + SSL
Sbjct: 44 GCMIRLSFC--DSNIINHYMCEIFPLLQLS---------------CSSTYANELVSSL-- 84
Query: 172 FIDILTCVFCLL-GRKILTCAAWLFCTRVCLKEGVGLNPPIVQEMVFSVYNIIMI 11
+ C+ + G ILT + VC+ + I Q FSV+ +M+
Sbjct: 85 ----IACIVVIASGLVILTSYVSILLNIVCMSSATASSEYIDQGKFFSVFYTLMV 135
>sp|O02769|ML1A_BOVIN MELATONIN RECEPTOR TYPE 1A (MEL-1A-R) gi|2130529|gb|AAC48725.1|
melatonin receptor 1A [Bos taurus]
Length = 257
Score = 32.7 bits (73), Expect = 3.3
Identities = 17/48 (35%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
Frame = -3
Query: 276 FCYLFFWAYPVHVKTR-KPFFAPKVWPGGFAQVYGNLLIS*LVFFVCW 136
FCYL WA + V+ R KP PK+ P F + + + ++F +CW
Sbjct: 125 FCYLRIWALVLQVRWRVKPDNKPKLKPQDFRN-FVTMFVVFVLFAICW 171
>gb|AAH16887.1| Unknown (protein for MGC:18401) [Mus musculus]
Length = 548
Score = 32.7 bits (73), Expect = 3.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 336 VLIAQPSSFSQTLTFSSTQSTGGRDGRPSFQASLSPPP 449
++ QP SF Q L F +T + + PSF SPPP
Sbjct: 309 IISGQPPSFGQPLVFGTTPAVQVWNQSPSFATPASPPP 346
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,057,699
Number of Sequences: 1393205
Number of extensions: 11948070
Number of successful extensions: 33740
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 32622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33718
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
