Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015597A_C01 KMC015597A_c01
(648 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180326.1| putative zinc finger protein; protein id: At2g2... 122 3e-27
ref|NP_190848.1| zinc finger - like protein; protein id: At3g528... 114 9e-25
gb|AAK68811.1| zinc finger-like protein [Arabidopsis thaliana] g... 114 9e-25
ref|NP_564585.1| expressed protein; protein id: At1g51200.1, sup... 113 3e-24
gb|AAN71995.1| expressed protein [Arabidopsis thaliana] 113 3e-24
>ref|NP_180326.1| putative zinc finger protein; protein id: At2g27580.1, supported by
cDNA: 14203., supported by cDNA: gi_18253038
[Arabidopsis thaliana] gi|25407907|pir||D84674
hypothetical protein At2g27580 [imported] - Arabidopsis
thaliana gi|3860274|gb|AAC73042.1| putative zinc finger
protein [Arabidopsis thaliana]
gi|18253039|gb|AAL62446.1| putative zinc finger protein
[Arabidopsis thaliana] gi|20197663|gb|AAM15188.1|
putative zinc finger protein [Arabidopsis thaliana]
gi|21553397|gb|AAM62490.1| putative zinc finger protein
[Arabidopsis thaliana] gi|23198266|gb|AAN15660.1|
putative zinc finger protein [Arabidopsis thaliana]
Length = 163
Score = 122 bits (307), Expect = 3e-27
Identities = 60/121 (49%), Positives = 74/121 (60%), Gaps = 13/121 (10%)
Frame = -3
Query: 643 ASSAKQVLNQSLAL-------------PAPVVISEPAAASSSSVVASPRAVEEVKPNGPS 503
+S+AK L QSLA P P E A S A+ + P P
Sbjct: 43 SSTAKHALTQSLAAVGAAASSSVSPPPPPPADSKEIVEAKSEKRAAAEPEEADGPPQDPK 102
Query: 502 RCVTCRKRVGLTGFKCRCGMTLCGVHRYPEQHDCEFDFKGLGRDQIAKANPVVKAEKLEK 323
RC+TCR+RVG+TGF+CRCG CG HRY EQH+C FDFK +G+D+IAKANP+VKA+KLEK
Sbjct: 103 RCLTCRRRVGITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIAKANPIVKADKLEK 162
Query: 322 I 320
I
Sbjct: 163 I 163
>ref|NP_190848.1| zinc finger - like protein; protein id: At3g52800.1, supported by
cDNA: gi_14596166 [Arabidopsis thaliana]
gi|11358932|pir||T49033 zinc finger-like protein -
Arabidopsis thaliana gi|7669954|emb|CAB89241.1| zinc
finger-like protein [Arabidopsis thaliana]
Length = 170
Score = 114 bits (286), Expect = 9e-25
Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 24/133 (18%)
Frame = -3
Query: 646 QASSAKQVLNQSLALPAPVVISEPAAASSSSVVASP------------------RAV--- 530
Q+SS K + SL++ P +SSSS ++SP +AV
Sbjct: 46 QSSSIKSTVESSLSVSPP--------SSSSSEISSPIIPPLLKNPSVKLEVPEKKAVISL 97
Query: 529 ---EEVKPNGPSRCVTCRKRVGLTGFKCRCGMTLCGVHRYPEQHDCEFDFKGLGRDQIAK 359
E+ + P+RC TCRKRVGLTGFKCRCG CGVHRYPE H C +DFK GR++IAK
Sbjct: 98 PTTEQNQQQRPNRCTTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAK 157
Query: 358 ANPVVKAEKLEKI 320
ANP+VKA KL+KI
Sbjct: 158 ANPLVKAAKLQKI 170
>gb|AAK68811.1| zinc finger-like protein [Arabidopsis thaliana]
gi|18377546|gb|AAL66939.1| zinc finger-like protein
[Arabidopsis thaliana]
Length = 169
Score = 114 bits (286), Expect = 9e-25
Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 24/133 (18%)
Frame = -3
Query: 646 QASSAKQVLNQSLALPAPVVISEPAAASSSSVVASP------------------RAV--- 530
Q+SS K + SL++ P +SSSS ++SP +AV
Sbjct: 45 QSSSIKSTVESSLSVSPP--------SSSSSEISSPIIPPLLKNPSVKLEVPEKKAVISL 96
Query: 529 ---EEVKPNGPSRCVTCRKRVGLTGFKCRCGMTLCGVHRYPEQHDCEFDFKGLGRDQIAK 359
E+ + P+RC TCRKRVGLTGFKCRCG CGVHRYPE H C +DFK GR++IAK
Sbjct: 97 PTTEQNQQQRPNRCTTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAK 156
Query: 358 ANPVVKAEKLEKI 320
ANP+VKA KL+KI
Sbjct: 157 ANPLVKAAKLQKI 169
>ref|NP_564585.1| expressed protein; protein id: At1g51200.1, supported by cDNA:
gi_15912334 [Arabidopsis thaliana]
gi|25405449|pir||G96549 hypothetical protein F11M15.7
[imported] - Arabidopsis thaliana
gi|4836932|gb|AAD30634.1|AC006085_7 Unknown protein
[Arabidopsis thaliana] gi|15912335|gb|AAL08301.1|
At1g51200/F11M15_6 [Arabidopsis thaliana]
Length = 173
Score = 113 bits (282), Expect = 3e-24
Identities = 54/83 (65%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Frame = -3
Query: 565 SSSSVVASPRAVEEV-KPNGPSRCVTCRKRVGLTGFKCRCGMTLCGVHRYPEQHDCEFDF 389
SS VVA A EE KP GPSRC TC KRVGLTGFKCRCG CG HRY + HDC F++
Sbjct: 91 SSVQVVAEVVAPEEAAKPKGPSRCTTCNKRVGLTGFKCRCGSLFCGTHRYADVHDCSFNY 150
Query: 388 KGLGRDQIAKANPVVKAEKLEKI 320
++ IAKANPVVKAEKL+KI
Sbjct: 151 HAAAQEAIAKANPVVKAEKLDKI 173
>gb|AAN71995.1| expressed protein [Arabidopsis thaliana]
Length = 173
Score = 113 bits (282), Expect = 3e-24
Identities = 54/83 (65%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Frame = -3
Query: 565 SSSSVVASPRAVEEV-KPNGPSRCVTCRKRVGLTGFKCRCGMTLCGVHRYPEQHDCEFDF 389
SS VVA A EE KP GPSRC TC KRVGLTGFKCRCG CG HRY + HDC F++
Sbjct: 91 SSVQVVAEVVAPEEAAKPKGPSRCTTCNKRVGLTGFKCRCGSLFCGTHRYADVHDCSFNY 150
Query: 388 KGLGRDQIAKANPVVKAEKLEKI 320
++ IAKANPVVKAEKL+KI
Sbjct: 151 HAAAQEAIAKANPVVKAEKLDKI 173
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 639,862,461
Number of Sequences: 1393205
Number of extensions: 17416127
Number of successful extensions: 133089
Number of sequences better than 10.0: 1368
Number of HSP's better than 10.0 without gapping: 77907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119326
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
