Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015587A_C01 KMC015587A_c01
(466 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190975.1| putative protein; protein id: At3g54070.1 [Arab... 106 1e-22
ref|NP_198430.1| putative protein; protein id: At5g35810.1 [Arab... 104 4e-22
ref|NP_196090.1| putative protein; protein id: At5g04700.1 [Arab... 99 3e-20
dbj|BAB01793.1| emb|CAB70981.1~gene_id:MVE11.3~similar to unknow... 98 4e-20
ref|NP_188497.1| hypothetical protein; protein id: At3g18670.1 [... 98 4e-20
>ref|NP_190975.1| putative protein; protein id: At3g54070.1 [Arabidopsis thaliana]
gi|11357596|pir||T47566 hypothetical protein F24B22.30 -
Arabidopsis thaliana gi|6822053|emb|CAB70981.1| putative
protein [Arabidopsis thaliana]
Length = 574
Score = 106 bits (264), Expect = 1e-22
Identities = 67/137 (48%), Positives = 82/137 (58%), Gaps = 1/137 (0%)
Frame = -1
Query: 466 GNNDNT-GSPNYLEKPSFLLFALSDATALISSSTSILIFLSILISRYAEDDFLKSLPLKL 290
G+ NT G PN+ ++ F +F LSD+ AL SS SI+IFLSI SRYAE+DF LP KL
Sbjct: 434 GDKANTLGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKL 493
Query: 289 ISGLIALFISIISMMVAFSSAFFITYYHGLKWVPYLISGLAFLPIPLFIYLQFSLWSDIA 110
+ GL ALFISIISM++AF+ + + LIS LA L F YL F LW +
Sbjct: 494 MFGLSALFISIISMILAFTFSMILIRVEKASLSLVLISCLASLTALTFAYLYFHLWFNTL 553
Query: 109 YSAYICSSLFRPRKRMI 59
S YI LF RKR I
Sbjct: 554 RSVYISMFLFLGRKRGI 570
>ref|NP_198430.1| putative protein; protein id: At5g35810.1 [Arabidopsis thaliana]
gi|10176700|dbj|BAB09922.1|
emb|CAB70981.1~gene_id:MIK22.12~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 347
Score = 104 bits (260), Expect = 4e-22
Identities = 62/139 (44%), Positives = 82/139 (58%), Gaps = 6/139 (4%)
Frame = -1
Query: 466 GNNDNTGSPNYLEKPSFL------LFALSDATALISSSTSILIFLSILISRYAEDDFLKS 305
G ND +G L P+F +F +SD+ AL+SS TSI+IFLSIL SRYAE F +
Sbjct: 204 GGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEASFQTT 263
Query: 304 LPLKLISGLIALFISIISMMVAFSSAFFITYYHGLKWVPYLISGLAFLPIPLFIYLQFSL 125
LP KL+ GL+ALF+SIISM++AF++ + KW L+ +A F+ L F L
Sbjct: 264 LPTKLMLGLLALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVLHFQL 323
Query: 124 WSDIAYSAYICSSLFRPRK 68
W D SAY+ LF RK
Sbjct: 324 WFDTLRSAYLSKFLFHGRK 342
>ref|NP_196090.1| putative protein; protein id: At5g04700.1 [Arabidopsis thaliana]
gi|11282312|pir||T48466 hypothetical protein T1E3.60 -
Arabidopsis thaliana gi|7413532|emb|CAB86012.1| putative
protein [Arabidopsis thaliana]
gi|9758445|dbj|BAB08974.1| gene_id:MUK11.2~unknown
protein [Arabidopsis thaliana]
Length = 669
Score = 98.6 bits (244), Expect = 3e-20
Identities = 54/124 (43%), Positives = 77/124 (61%), Gaps = 1/124 (0%)
Frame = -1
Query: 466 GNNDNT-GSPNYLEKPSFLLFALSDATALISSSTSILIFLSILISRYAEDDFLKSLPLKL 290
G +DN+ G P +L F++F +SD + +S TS+LIFL IL +RY+ DDFL LP K+
Sbjct: 533 GTDDNSKGKPFHLRDRRFIIFIVSDLISCFASCTSVLIFLGILTARYSFDDFLVFLPTKM 592
Query: 289 ISGLIALFISIISMMVAFSSAFFITYYHGLKWVPYLISGLAFLPIPLFIYLQFSLWSDIA 110
I+GL LF+SI +M++AFSSA F KW+ A LP LF+ LQ+ L ++
Sbjct: 593 IAGLSILFVSIAAMLIAFSSALFTMMGKEGKWIVAPTILFACLPALLFVLLQYPLLKEMI 652
Query: 109 YSAY 98
+S Y
Sbjct: 653 FSTY 656
>dbj|BAB01793.1| emb|CAB70981.1~gene_id:MVE11.3~similar to unknown protein
[Arabidopsis thaliana]
Length = 653
Score = 98.2 bits (243), Expect = 4e-20
Identities = 52/133 (39%), Positives = 79/133 (59%)
Frame = -1
Query: 466 GNNDNTGSPNYLEKPSFLLFALSDATALISSSTSILIFLSILISRYAEDDFLKSLPLKLI 287
G + G P Y+ + F +F +SDA +L +S S+L+FL IL SRY E+DFL+SLP KLI
Sbjct: 517 GGYRSDGMPLYIHQHRFKIFLISDAISLFTSCMSLLMFLGILKSRYREEDFLRSLPTKLI 576
Query: 286 SGLIALFISIISMMVAFSSAFFITYYHGLKWVPYLISGLAFLPIPLFIYLQFSLWSDIAY 107
GL+ALF+S+ +M+V F + WV LA +P+ +F+ LQF + +I
Sbjct: 577 VGLLALFLSMATMIVTFVVTLMTLVGEKISWVSAQFMFLAVIPLGMFVVLQFPVLLEIFR 636
Query: 106 SAYICSSLFRPRK 68
+ Y + +PR+
Sbjct: 637 ATYCPNVFDKPRR 649
>ref|NP_188497.1| hypothetical protein; protein id: At3g18670.1 [Arabidopsis
thaliana]
Length = 598
Score = 98.2 bits (243), Expect = 4e-20
Identities = 52/133 (39%), Positives = 79/133 (59%)
Frame = -1
Query: 466 GNNDNTGSPNYLEKPSFLLFALSDATALISSSTSILIFLSILISRYAEDDFLKSLPLKLI 287
G + G P Y+ + F +F +SDA +L +S S+L+FL IL SRY E+DFL+SLP KLI
Sbjct: 462 GGYRSDGMPLYIHQHRFKIFLISDAISLFTSCMSLLMFLGILKSRYREEDFLRSLPTKLI 521
Query: 286 SGLIALFISIISMMVAFSSAFFITYYHGLKWVPYLISGLAFLPIPLFIYLQFSLWSDIAY 107
GL+ALF+S+ +M+V F + WV LA +P+ +F+ LQF + +I
Sbjct: 522 VGLLALFLSMATMIVTFVVTLMTLVGEKISWVSAQFMFLAVIPLGMFVVLQFPVLLEIFR 581
Query: 106 SAYICSSLFRPRK 68
+ Y + +PR+
Sbjct: 582 ATYCPNVFDKPRR 594
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,713,054
Number of Sequences: 1393205
Number of extensions: 7030841
Number of successful extensions: 19267
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 18801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19234
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
