Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015578A_C01 KMC015578A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||R5PM9 ribosomal protein L9 precursor, chloroplast - garden pea 158 4e-38
sp|P11894|RK9_PEA 50S RIBOSOMAL PROTEIN L9, CHLOROPLAST PRECURSO... 158 4e-38
gb|AAM92711.1| putative plastid ribosomal protein CL9 [Triticum ... 155 3e-37
ref|NP_190075.1| RP19 gene for chloroplast ribosomal protein CL9... 154 6e-37
ref|NP_441493.1| 50S ribosomal protein L9 [Synechocystis sp. PCC... 77 1e-13
>pir||R5PM9 ribosomal protein L9 precursor, chloroplast - garden pea
Length = 194
Score = 158 bits (400), Expect = 4e-38
Identities = 81/93 (87%), Positives = 86/93 (92%)
Frame = -1
Query: 582 AEKRRVKEEAQXLALIFETVGAFKVRRKGGKGKQIFGSVTAQDLVDIIKAQLQRDVDKRI 403
AEKRRV EEAQ LAL FET GAFKV+RKGGKGKQIFGSVTAQDLVDIIKAQLQR+VDKRI
Sbjct: 102 AEKRRVLEEAQQLALFFETFGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRI 161
Query: 402 VDLPEIRETGEYIAEIKLHPEVTAKVRVTVYGN 304
V+LPEIRETGEYIAE+KLHP+VTAKVRV V N
Sbjct: 162 VNLPEIRETGEYIAELKLHPDVTAKVRVNVIAN 194
>sp|P11894|RK9_PEA 50S RIBOSOMAL PROTEIN L9, CHLOROPLAST PRECURSOR (CL13)
gi|20881|emb|CAA32184.1| CL9 ribosomal preprotein (AA
-34 to 160) [Pisum sativum]
Length = 194
Score = 158 bits (400), Expect = 4e-38
Identities = 81/93 (87%), Positives = 86/93 (92%)
Frame = -1
Query: 582 AEKRRVKEEAQXLALIFETVGAFKVRRKGGKGKQIFGSVTAQDLVDIIKAQLQRDVDKRI 403
AEKRRV EEAQ LAL FET GAFKV+RKGGKGKQIFGSVTAQDLVDIIKAQLQR+VDKRI
Sbjct: 102 AEKRRVLEEAQQLALFFETFGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRI 161
Query: 402 VDLPEIRETGEYIAEIKLHPEVTAKVRVTVYGN 304
V+LPEIRETGEYIAE+KLHP+VTAKVRV V N
Sbjct: 162 VNLPEIRETGEYIAELKLHPDVTAKVRVNVIAN 194
>gb|AAM92711.1| putative plastid ribosomal protein CL9 [Triticum aestivum]
Length = 191
Score = 155 bits (393), Expect = 3e-37
Identities = 76/91 (83%), Positives = 86/91 (93%)
Frame = -1
Query: 582 AEKRRVKEEAQXLALIFETVGAFKVRRKGGKGKQIFGSVTAQDLVDIIKAQLQRDVDKRI 403
AEK+RVKEEAQ LA +FET+GAFKV RKGGKGKQIFGSVTAQDLVDIIK+QL RDVDKR+
Sbjct: 99 AEKKRVKEEAQQLARVFETIGAFKVPRKGGKGKQIFGSVTAQDLVDIIKSQLNRDVDKRL 158
Query: 402 VDLPEIRETGEYIAEIKLHPEVTAKVRVTVY 310
V++PEIRE GEY+AEIKLHP+VTAKVR+TVY
Sbjct: 159 VEVPEIREVGEYVAEIKLHPDVTAKVRLTVY 189
>ref|NP_190075.1| RP19 gene for chloroplast ribosomal protein CL9; protein id:
At3g44890.1, supported by cDNA: 13554., supported by
cDNA: gi_17381143 [Arabidopsis thaliana]
gi|133028|sp|P25864|RK9_ARATH 50S ribosomal protein L9,
chloroplast precursor (CL9) gi|71257|pir||R5MUL9
ribosomal protein L9 precursor, chloroplast [similarity]
- Arabidopsis thaliana gi|16499|emb|CAA77480.1| plastid
ribosomal protein CL9 [Arabidopsis thaliana]
gi|16501|emb|CAA77594.1| Chloroplast ribosomal protein
CL9 [Arabidopsis thaliana] gi|9798392|emb|CAC03539.1|
RP19 gene for chloroplast ribosomal protein CL9
[Arabidopsis thaliana] gi|24030284|gb|AAN41314.1|
putative RP19 gene for chloroplast ribosomal protein CL9
[Arabidopsis thaliana]
Length = 197
Score = 154 bits (390), Expect = 6e-37
Identities = 73/93 (78%), Positives = 88/93 (94%)
Frame = -1
Query: 582 AEKRRVKEEAQXLALIFETVGAFKVRRKGGKGKQIFGSVTAQDLVDIIKAQLQRDVDKRI 403
AEK+RVKEEAQ LA++F+TVGAFKV+RKGGKGK IFGSVTAQDLVDIIK+QLQ+D+DKR+
Sbjct: 105 AEKQRVKEEAQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRL 164
Query: 402 VDLPEIRETGEYIAEIKLHPEVTAKVRVTVYGN 304
V LPEIRETGEYIAE+KLHP+VTA+V++ V+ N
Sbjct: 165 VSLPEIRETGEYIAELKLHPDVTARVKINVFAN 197
>ref|NP_441493.1| 50S ribosomal protein L9 [Synechocystis sp. PCC 6803]
gi|485508|pir||S33614 ribosomal protein L9 -
Synechocystis sp. (strain PCC 6803)
gi|217101|dbj|BAA38819.1| 50S ribosomal protein L9
[Synechocystis sp.] gi|1653258|dbj|BAA18173.1| 50S
ribosomal protein L9 [Synechocystis sp. PCC 6803]
Length = 172
Score = 77.4 bits (189), Expect = 1e-13
Identities = 42/100 (42%), Positives = 65/100 (65%), Gaps = 11/100 (11%)
Frame = -1
Query: 579 EKRRVKE-----------EAQXLALIFETVGAFKVRRKGGKGKQIFGSVTAQDLVDIIKA 433
E+RR+KE EA+ +AL ET+G F ++++ G+ + IFG+VT Q++ D ++A
Sbjct: 72 EQRRLKELERLKAEKDAAEARKVAL--ETIGRFVIKKQVGEAEAIFGTVTTQEVADAVEA 129
Query: 432 QLQRDVDKRIVDLPEIRETGEYIAEIKLHPEVTAKVRVTV 313
+ +D+R + LP+I +TG Y A+IKLHPEV A V V V
Sbjct: 130 ATNQSLDRRGISLPDIHKTGFYQAQIKLHPEVIATVEVQV 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,906,672
Number of Sequences: 1393205
Number of extensions: 9114771
Number of successful extensions: 21923
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 21431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21865
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
