Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015563A_C01 KMC015563A_c01
(877 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173692.1| putative 40S ribosomal protein S18; protein id:... 296 4e-79
gb|AAK43840.1|AF370463_1 S18.A ribosomal protein [Arabidopsis th... 294 1e-78
dbj|BAC24844.1| putative ribosomal protein S18 [Oryza sativa (ja... 282 4e-75
gb|AAM92708.1| putative ribosomal protein S18 [Triticum aestivum] 281 7e-75
dbj|BAC24846.1| putative ribosomal protein S18 [Oryza sativa (ja... 275 7e-73
>ref|NP_173692.1| putative 40S ribosomal protein S18; protein id: At1g22780.1,
supported by cDNA: 35333., supported by cDNA:
gi_15724157 [Arabidopsis thaliana]
gi|15234790|ref|NP_192718.1| S18.A ribosomal protein;
protein id: At4g09800.1, supported by cDNA: 24071.,
supported by cDNA: gi_13877524, supported by cDNA:
gi_14423407 [Arabidopsis thaliana]
gi|18399100|ref|NP_564434.1| ribosomal protein S18,
putative; protein id: At1g34030.1, supported by cDNA:
27800., supported by cDNA: gi_14334583, supported by
cDNA: gi_17979112 [Arabidopsis thaliana]
gi|464707|sp|P34788|RS18_ARATH 40S ribosomal protein S18
gi|480908|pir||S37496 ribosomal protein S18.A, cytosolic
- Arabidopsis thaliana gi|405613|emb|CAA80684.1|
ribosomal protein S18A [Arabidopsis thaliana]
gi|434343|emb|CAA82273.1| S18 ribosomal protein
[Arabidopsis thaliana] gi|434345|emb|CAA82274.1| S18
ribosomal protein [Arabidopsis thaliana]
gi|434906|emb|CAA82275.1| S18 ribosomal protein
[Arabidopsis thaliana] gi|2505871|emb|CAA72909.1|
ribosomal protein S18A [Arabidopsis thaliana]
gi|3287678|gb|AAC25506.1|AAC25506 Match to ribosomal S18
gene mRNA gb|Z28701, DNA gb|Z23165 from A. thaliana.
ESTs gb|T21121, gb|Z17755, gb|R64776 and gb|R30430 come
from this gene. [Arabidopsis thaliana]
gi|4538910|emb|CAB39647.1| S18.A ribosomal protein
[Arabidopsis thaliana] gi|7267675|emb|CAB78103.1| S18.A
ribosomal protein [Arabidopsis thaliana]
gi|10086474|gb|AAG12534.1|AC015446_15 ribosomal protein
S18 [Arabidopsis thaliana]
gi|10092450|gb|AAG12853.1|AC079286_10 40S ribosomal
protein S18; 25853-24673 [Arabidopsis thaliana]
gi|14334584|gb|AAK59471.1| putative ribosomal protein
S18 [Arabidopsis thaliana]
gi|14423408|gb|AAK62386.1|AF386941_1 S18.A ribosomal
protein [Arabidopsis thaliana]
gi|15724158|gb|AAL06471.1|AF411781_1 At1g22780/T22J18_5
[Arabidopsis thaliana] gi|17979113|gb|AAL47500.1|
putative ribosomal protein S18 [Arabidopsis thaliana]
gi|21555397|gb|AAM63849.1| ribosomal protein S18,
putative [Arabidopsis thaliana]
gi|21592452|gb|AAM64403.1| ribosomal protein S18,
putative [Arabidopsis thaliana]
gi|21593027|gb|AAM64976.1| ribosomal protein S18,
putative [Arabidopsis thaliana]
Length = 152
Score = 296 bits (757), Expect = 4e-79
Identities = 144/152 (94%), Positives = 149/152 (97%)
Frame = -3
Query: 848 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANICCKKADVDMNKRAGELS 669
MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANI CKKADVDMNKRAGELS
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 668 AAELDNVMTVVANPKQFKIPDWFLNRKKDYKDGKYHQVVSNALDMKLRDDLERLKKIRNH 489
AAE+DN+MT+VANP+QFKIPDWFLNR+KDYKDGKY QVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 488 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 393
RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
>gb|AAK43840.1|AF370463_1 S18.A ribosomal protein [Arabidopsis thaliana]
gi|17978783|gb|AAL47385.1| S18.A ribosomal protein
[Arabidopsis thaliana]
Length = 152
Score = 294 bits (753), Expect = 1e-78
Identities = 143/152 (94%), Positives = 148/152 (97%)
Frame = -3
Query: 848 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANICCKKADVDMNKRAGELS 669
MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANI CKK DVDMNKRAGELS
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKTDVDMNKRAGELS 60
Query: 668 AAELDNVMTVVANPKQFKIPDWFLNRKKDYKDGKYHQVVSNALDMKLRDDLERLKKIRNH 489
AAE+DN+MT+VANP+QFKIPDWFLNR+KDYKDGKY QVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 488 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 393
RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
>dbj|BAC24844.1| putative ribosomal protein S18 [Oryza sativa (japonica
cultivar-group)] gi|28269440|gb|AAO37983.1| putative
ribosomal protein S18A [Oryza sativa (japonica
cultivar-group)]
Length = 152
Score = 282 bits (722), Expect = 4e-75
Identities = 133/152 (87%), Positives = 146/152 (95%)
Frame = -3
Query: 848 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANICCKKADVDMNKRAGELS 669
MSL+A E+FQHILR+LNTNVDGKQKIMFALTSIKG+GRRF+NI CKKAD+DMNKRAGEL+
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRAGELT 60
Query: 668 AAELDNVMTVVANPKQFKIPDWFLNRKKDYKDGKYHQVVSNALDMKLRDDLERLKKIRNH 489
EL+ +MTVVANP+QFK+PDWFLNRKKDYKDG++ QVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61 PEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 488 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 393
RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
>gb|AAM92708.1| putative ribosomal protein S18 [Triticum aestivum]
Length = 152
Score = 281 bits (720), Expect = 7e-75
Identities = 133/152 (87%), Positives = 145/152 (94%)
Frame = -3
Query: 848 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANICCKKADVDMNKRAGELS 669
MSL+A EEFQHILRVLNTNVDGKQKIMFALTSIKG+GRRF+NI CKKAD+DMNKRAGELS
Sbjct: 1 MSLIAGEEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELS 60
Query: 668 AAELDNVMTVVANPKQFKIPDWFLNRKKDYKDGKYHQVVSNALDMKLRDDLERLKKIRNH 489
A E+D +M VV NP+QFK+PDWFLNRKKDYKDG++ QVVSNA+DMKLRDDLERLKKIRNH
Sbjct: 61 AEEMDRLMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNH 120
Query: 488 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 393
RGLRHYWG+RVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGVRVRGQHTKTTGRRGKTVGVSKKR 152
>dbj|BAC24846.1| putative ribosomal protein S18 [Oryza sativa (japonica
cultivar-group)]
Length = 148
Score = 275 bits (703), Expect = 7e-73
Identities = 130/146 (89%), Positives = 141/146 (96%)
Frame = -3
Query: 830 EEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANICCKKADVDMNKRAGELSAAELDN 651
E+FQHILR+LNTNVDGKQKIMFALTSIKGIGRRF+NI CKKAD+DMNKRAGEL+ EL+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 650 VMTVVANPKQFKIPDWFLNRKKDYKDGKYHQVVSNALDMKLRDDLERLKKIRNHRGLRHY 471
+MTVVANP+QFK+PDWFLNRKKDYKDG++ QVVSNALDMKLRDDLERLKKIRNHRGLRHY
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 470 WGLRVRGQHTKTTGRRGKTVGVSKKR 393
WGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 123 WGLRVRGQHTKTTGRRGKTVGVSKKR 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 750,938,915
Number of Sequences: 1393205
Number of extensions: 17071791
Number of successful extensions: 49133
Number of sequences better than 10.0: 295
Number of HSP's better than 10.0 without gapping: 46921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49007
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47103382053
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
