Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015554A_C01 KMC015554A_c01
(463 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564781.1| expressed protein; protein id: At1g61620.1, sup... 167 4e-41
dbj|BAC41858.1| unknown protein [Arabidopsis thaliana] 164 4e-40
ref|NP_573288.1| CG6179-PA [Drosophila melanogaster] gi|7293453|... 54 6e-07
gb|EAA29035.1| hypothetical protein [Neurospora crassa] 52 3e-06
gb|EAA11755.1| agCP6112 [Anopheles gambiae str. PEST] 52 3e-06
>ref|NP_564781.1| expressed protein; protein id: At1g61620.1, supported by cDNA:
15739. [Arabidopsis thaliana] gi|25404329|pir||F96641
hypothetical protein T25B24.3 [imported] - Arabidopsis
thaliana gi|4585875|gb|AAD25548.1|AC005850_5 Unknown
protein [Arabidopsis thaliana]
gi|21553686|gb|AAM62779.1| unknown [Arabidopsis
thaliana]
Length = 310
Score = 167 bits (424), Expect = 4e-41
Identities = 79/110 (71%), Positives = 91/110 (81%), Gaps = 7/110 (6%)
Frame = -1
Query: 463 DTSEPKNPK-------ALDNSYICPSCKVTLTNTMSLVAISSCGHVFCKKCADRFMASDK 305
D SE + K + D SYICPSCKVTLTNTMSLVA+SSCGHVFCKKCA++FM DK
Sbjct: 198 DNSEEEETKTKSASSSSYDKSYICPSCKVTLTNTMSLVALSSCGHVFCKKCAEKFMPVDK 257
Query: 304 VCLVCNKACKERHLVNLEKGGTGFAGHGDHLEARDFKHLGSGSGLGLVRP 155
VCLVC+K CK+R+LV L+KGGTGFA H DHLEA+++KHLGSGSGLGLVRP
Sbjct: 258 VCLVCDKPCKDRNLVGLKKGGTGFAEHDDHLEAKEYKHLGSGSGLGLVRP 307
>dbj|BAC41858.1| unknown protein [Arabidopsis thaliana]
Length = 310
Score = 164 bits (415), Expect = 4e-40
Identities = 78/110 (70%), Positives = 90/110 (80%), Gaps = 7/110 (6%)
Frame = -1
Query: 463 DTSEPKNPK-------ALDNSYICPSCKVTLTNTMSLVAISSCGHVFCKKCADRFMASDK 305
D SE + K + D SYICPSCKVTLTNTMSLVA+SSCGHVFCKKCA++FM DK
Sbjct: 198 DNSEEEETKTKSASSSSYDKSYICPSCKVTLTNTMSLVALSSCGHVFCKKCAEKFMPVDK 257
Query: 304 VCLVCNKACKERHLVNLEKGGTGFAGHGDHLEARDFKHLGSGSGLGLVRP 155
VCLVC+K CK+R+LV L+K GTGFA H DHLEA+++KHLGSGSGLGLVRP
Sbjct: 258 VCLVCDKPCKDRNLVGLKKVGTGFAEHDDHLEAKEYKHLGSGSGLGLVRP 307
>ref|NP_573288.1| CG6179-PA [Drosophila melanogaster] gi|7293453|gb|AAF48829.1|
CG6179-PA [Drosophila melanogaster]
Length = 307
Score = 54.3 bits (129), Expect = 6e-07
Identities = 23/79 (29%), Positives = 44/79 (55%)
Frame = -1
Query: 436 ALDNSYICPSCKVTLTNTMSLVAISSCGHVFCKKCADRFMASDKVCLVCNKACKERHLVN 257
A + Y+CP L+N + + G V +C +R + D + + ++ KE+ ++
Sbjct: 222 AKEARYMCPITHDVLSNAVPCAVLRPTGDVVTMECVERLIRKDMIHPLTDRKLKEKDIIP 281
Query: 256 LEKGGTGFAGHGDHLEARD 200
L++GGTG+A DHL+A++
Sbjct: 282 LQRGGTGYATTNDHLQAKE 300
>gb|EAA29035.1| hypothetical protein [Neurospora crassa]
Length = 395
Score = 52.0 bits (123), Expect = 3e-06
Identities = 30/91 (32%), Positives = 41/91 (44%), Gaps = 14/91 (15%)
Frame = -1
Query: 457 SEPKNPKALDNSYICPSCKVTLTNTMSLVAISSCGHVFCKKCADRFM---------ASDK 305
+E ++ + ICP+CK L+N+ CGHV CK C DRFM A D
Sbjct: 267 TEEEDSSTKTKARICPACKKALSNSSRATLAKPCGHVLCKNCVDRFMKPMGHHDPHAPDV 326
Query: 304 -----VCLVCNKACKERHLVNLEKGGTGFAG 227
VC VC+ E+ + +KG G G
Sbjct: 327 DPDAIVCYVCDTELTEKKESSSKKGKEGKKG 357
>gb|EAA11755.1| agCP6112 [Anopheles gambiae str. PEST]
Length = 294
Score = 52.0 bits (123), Expect = 3e-06
Identities = 25/90 (27%), Positives = 48/90 (52%)
Frame = -1
Query: 463 DTSEPKNPKALDNSYICPSCKVTLTNTMSLVAISSCGHVFCKKCADRFMASDKVCLVCNK 284
D ++ K+ A +N Y+C L+N++ + G V +C ++ + D + + N+
Sbjct: 200 DPADKKSLIAKENRYMCAVTHDILSNSVPCAVLKPTGDVVTIECVEKIIKKDMIHPLTNE 259
Query: 283 ACKERHLVNLEKGGTGFAGHGDHLEARDFK 194
E ++ L++GGTGFA + LEA++ K
Sbjct: 260 KLSESDIIPLQRGGTGFATTNEKLEAKEQK 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,089,755
Number of Sequences: 1393205
Number of extensions: 8521258
Number of successful extensions: 26673
Number of sequences better than 10.0: 626
Number of HSP's better than 10.0 without gapping: 25484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26585
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
