Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015551A_C01 KMC015551A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181204.1| polyadenylate-binding protein (PABP), putative;... 91 1e-32
ref|NP_003810.1| poly A binding protein, cytoplasmic 4; inducibl... 80 4e-27
pir||PS0381 polyadenylate-binding protein II - human (fragment) ... 80 4e-27
ref|NP_570951.1| poly(A)-binding protein, cytoplasmic 4-like [Mu... 80 1e-26
ref|NP_683717.1| poly A binding protein, cytoplasmic 4 [Mus musc... 80 1e-26
>ref|NP_181204.1| polyadenylate-binding protein (PABP), putative; protein id:
At2g36660.1 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8|PABX_ARATH Probable
polyadenylate-binding protein At2g36660 (Poly(A)-binding
protein At2g36660) (PABP) gi|25294315|pir||B84783
probable poly(A) binding protein [imported] -
Arabidopsis thaliana gi|4415911|gb|AAD20142.1| putative
poly(A) binding protein [Arabidopsis thaliana]
Length = 609
Score = 90.5 bits (223), Expect(2) = 1e-32
Identities = 44/61 (72%), Positives = 50/61 (81%)
Frame = -3
Query: 366 SNIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAVNT 187
SNIYVKN++ V++EELR HFS CG+IT K+M DEKG SKGFGFVCFSTPEEA AV T
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 186 F 184
F
Sbjct: 364 F 364
Score = 70.5 bits (171), Expect(2) = 1e-32
Identities = 31/54 (57%), Positives = 43/54 (79%)
Frame = -2
Query: 517 KEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQLGIKHL 356
+EKF+ FGKIVSL I+KDEN + +G+ FVN++N +DA+RA E +NGT+ G K L
Sbjct: 218 REKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCL 271
Score = 54.7 bits (130), Expect(2) = 1e-14
Identities = 24/60 (40%), Positives = 38/60 (63%)
Frame = -3
Query: 366 SNIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAVNT 187
+N+Y+KN+D +VS++ LR F+ G I + KDE + +G+ FV F PE+A +A T
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Score = 46.2 bits (108), Expect(2) = 1e-14
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = -2
Query: 517 KEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQLGIKHL 356
++ F FG IVS ++ E+G S+G+GFV +E D A A++ +N T + K +
Sbjct: 129 QDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
Score = 45.8 bits (107), Expect = 3e-04
Identities = 22/59 (37%), Positives = 36/59 (60%)
Frame = -3
Query: 363 NIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAVNT 187
N++VKN+ ++V++ L+ F G+I KV E G S+G+GFV F + A+ A+ T
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQT 171
Score = 38.1 bits (87), Expect = 0.061
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -2
Query: 517 KEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNG 380
++ FS G I S + DE G SKGFGFV + ++A A++ +G
Sbjct: 321 RKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHG 366
>ref|NP_003810.1| poly A binding protein, cytoplasmic 4; inducible poly(A)-binding
protein; poly(A)-binding protein, cytoplasmic 4
(inducible form) [Homo sapiens]
gi|12229875|sp|Q13310|PAB4_HUMAN Polyadenylate-binding
protein 4 (Poly(A)-binding protein 4) (PABP 4)
(Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein-1) (APP-1)
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding
protein gi|2801403|gb|AAB97309.1| polyadenylate binding
protein [Homo sapiens] gi|1585757|prf||2201474A
inducible poly(A)-binding protein
Length = 644
Score = 79.7 bits (195), Expect(2) = 4e-27
Identities = 40/59 (67%), Positives = 46/59 (77%)
Frame = -3
Query: 369 GSNIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAV 193
G N+Y+KN+DD + DE+LR FS GSIT AKVM E G SKGFGFVCFS+PEEA KAV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 63.2 bits (152), Expect(2) = 4e-27
Identities = 28/52 (53%), Positives = 38/52 (72%)
Frame = -2
Query: 517 KEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQLGIK 362
KE FS FGK +S+ + +D NG SKGFGFV+YE +DA +A+E MNG ++ K
Sbjct: 208 KELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 61.2 bits (147), Expect(2) = 7e-17
Identities = 29/58 (50%), Positives = 37/58 (63%)
Frame = -3
Query: 366 SNIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAV 193
+N+Y+KN + V DE L+ FS G KVM+D G SKGFGFV + E+ANKAV
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
Score = 52.8 bits (125), Expect(2) = 9e-12
Identities = 26/57 (45%), Positives = 39/57 (67%)
Frame = -3
Query: 363 NIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAV 193
N+++KN+D ++ ++ L FSA G+I KV+ DE G SKG+ FV F T E A+KA+
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAI 155
Score = 47.0 bits (110), Expect(2) = 7e-17
Identities = 23/48 (47%), Positives = 33/48 (67%)
Frame = -2
Query: 514 EKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQL 371
+ FS+FG I+S + DENG SKG+ FV++E + A +A+E MNG L
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 7e-04
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = -2
Query: 517 KEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQLGIKHL 356
+++FS FG I S + E+G SKGFGFV + + ++A +A+ MNG +G K L
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 38.1 bits (87), Expect(2) = 9e-12
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -2
Query: 514 EKFSSFGKIVSLTISKDE-NGMSKGFGFVNYENSDDAKRALEAMN 383
EKFS G ++S+ + +D S G+ +VN++ DA+RAL+ MN
Sbjct: 29 EKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
>pir||PS0381 polyadenylate-binding protein II - human (fragment)
gi|1262583|dbj|BAA02244.1| polyadenylate binding protein
II [Homo sapiens]
Length = 193
Score = 79.7 bits (195), Expect(2) = 4e-27
Identities = 40/59 (67%), Positives = 46/59 (77%)
Frame = -3
Query: 369 GSNIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAV 193
G N+Y+KN+DD + DE+LR FS GSIT AKVM E G SKGFGFVCFS+PEEA KAV
Sbjct: 104 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 161
Score = 63.2 bits (152), Expect(2) = 4e-27
Identities = 28/52 (53%), Positives = 38/52 (72%)
Frame = -2
Query: 517 KEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQLGIK 362
KE FS FGK +S+ + +D NG SKGFGFV+YE +DA +A+E MNG ++ K
Sbjct: 19 KELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 70
Score = 61.2 bits (147), Expect = 7e-09
Identities = 29/58 (50%), Positives = 37/58 (63%)
Frame = -3
Query: 366 SNIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAV 193
+N+Y+KN + V DE L+ FS G KVM+D G SKGFGFV + E+ANKAV
Sbjct: 2 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 59
Score = 44.7 bits (104), Expect = 7e-04
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = -2
Query: 517 KEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQLGIKHL 356
+++FS FG I S + E+G SKGFGFV + + ++A +A+ MNG +G K L
Sbjct: 122 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 174
>ref|NP_570951.1| poly(A)-binding protein, cytoplasmic 4-like [Mus musculus]
gi|13096978|gb|AAH03283.1| Similar to poly(A)-binding
protein, cytoplasmic 4 (inducible form) [Mus musculus]
Length = 660
Score = 79.7 bits (195), Expect(2) = 1e-26
Identities = 40/59 (67%), Positives = 46/59 (77%)
Frame = -3
Query: 369 GSNIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAV 193
G N+Y+KN+DD + DE+LR FS GSIT AKVM E G SKGFGFVCFS+PEEA KAV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 61.6 bits (148), Expect(2) = 1e-26
Identities = 27/52 (51%), Positives = 38/52 (72%)
Frame = -2
Query: 517 KEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQLGIK 362
KE FS FGK +S+ + +D +G SKGFGFV+YE +DA +A+E MNG ++ K
Sbjct: 208 KELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 259
Score = 58.9 bits (141), Expect(2) = 3e-16
Identities = 28/58 (48%), Positives = 36/58 (61%)
Frame = -3
Query: 366 SNIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAV 193
+N+Y+KN + V D L+ FS G KVM+D G SKGFGFV + E+ANKAV
Sbjct: 191 TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAV 248
Score = 52.8 bits (125), Expect(2) = 9e-12
Identities = 26/57 (45%), Positives = 39/57 (67%)
Frame = -3
Query: 363 NIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAV 193
N+++KN+D ++ ++ L FSA G+I KV+ DE G SKG+ FV F T E A+KA+
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAI 155
Score = 47.0 bits (110), Expect(2) = 3e-16
Identities = 23/48 (47%), Positives = 33/48 (67%)
Frame = -2
Query: 514 EKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQL 371
+ FS+FG I+S + DENG SKG+ FV++E + A +A+E MNG L
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 7e-04
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = -2
Query: 517 KEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQLGIKHL 356
+++FS FG I S + E+G SKGFGFV + + ++A +A+ MNG +G K L
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 38.1 bits (87), Expect(2) = 9e-12
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -2
Query: 514 EKFSSFGKIVSLTISKDE-NGMSKGFGFVNYENSDDAKRALEAMN 383
EKFS G ++S+ + +D S G+ +VN++ DA+RAL+ MN
Sbjct: 29 EKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
>ref|NP_683717.1| poly A binding protein, cytoplasmic 4 [Mus musculus]
gi|16307591|gb|AAH10345.1| Unknown (protein for
MGC:11665) [Mus musculus]
Length = 615
Score = 79.7 bits (195), Expect(2) = 1e-26
Identities = 40/59 (67%), Positives = 46/59 (77%)
Frame = -3
Query: 369 GSNIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAV 193
G N+Y+KN+DD + DE+LR FS GSIT AKVM E G SKGFGFVCFS+PEEA KAV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 61.6 bits (148), Expect(2) = 1e-26
Identities = 27/52 (51%), Positives = 38/52 (72%)
Frame = -2
Query: 517 KEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQLGIK 362
KE FS FGK +S+ + +D +G SKGFGFV+YE +DA +A+E MNG ++ K
Sbjct: 208 KELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 259
Score = 58.9 bits (141), Expect(2) = 3e-16
Identities = 28/58 (48%), Positives = 36/58 (61%)
Frame = -3
Query: 366 SNIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAV 193
+N+Y+KN + V D L+ FS G KVM+D G SKGFGFV + E+ANKAV
Sbjct: 191 TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAV 248
Score = 52.8 bits (125), Expect(2) = 9e-12
Identities = 26/57 (45%), Positives = 39/57 (67%)
Frame = -3
Query: 363 NIYVKNIDDNVSDEELRGHFSACGSITYAKVMKDEKGISKGFGFVCFSTPEEANKAV 193
N+++KN+D ++ ++ L FSA G+I KV+ DE G SKG+ FV F T E A+KA+
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAI 155
Score = 47.0 bits (110), Expect(2) = 3e-16
Identities = 23/48 (47%), Positives = 33/48 (67%)
Frame = -2
Query: 514 EKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQL 371
+ FS+FG I+S + DENG SKG+ FV++E + A +A+E MNG L
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 9e-04
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = -2
Query: 517 KEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQLGIKHL 356
+ +FS FG I S + E+G SKGFGFV + + ++A +A+ MNG +G K L
Sbjct: 311 RREFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 38.1 bits (87), Expect(2) = 9e-12
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -2
Query: 514 EKFSSFGKIVSLTISKDE-NGMSKGFGFVNYENSDDAKRALEAMN 383
EKFS G ++S+ + +D S G+ +VN++ DA+RAL+ MN
Sbjct: 29 EKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,968,651
Number of Sequences: 1393205
Number of extensions: 9064260
Number of successful extensions: 28092
Number of sequences better than 10.0: 2028
Number of HSP's better than 10.0 without gapping: 23569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27593
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
