Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015544A_C01 KMC015544A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H84746 hypothetical protein At2g33550 [imported] - Arabidop... 213 2e-54
ref|NP_180913.2| hypothetical protein; protein id: At2g33550.1, ... 213 2e-54
dbj|BAB89675.1| hypothetical protein [Oryza sativa (japonica cul... 117 9e-26
ref|NP_181107.1| unknown protein; protein id: At2g35640.1 [Arabi... 75 9e-13
dbj|BAC43269.1| unknown protein [Arabidopsis thaliana] gi|289508... 74 1e-12
>pir||H84746 hypothetical protein At2g33550 [imported] - Arabidopsis thaliana
gi|2459437|gb|AAB80672.1| hypothetical protein
[Arabidopsis thaliana]
Length = 311
Score = 213 bits (542), Expect = 2e-54
Identities = 104/156 (66%), Positives = 124/156 (78%), Gaps = 3/156 (1%)
Frame = +3
Query: 108 IDGAVNGSPPFAAASDER-PTARLPRWTRQEILVLIQGKADAESRFKPGRAAGSAFGSS- 281
+DG N S P D+ TARLPRWTRQEILVLIQGK AE+R + GRAAG A GS
Sbjct: 13 VDGGENSSAPSNDGGDDGVKTARLPRWTRQEILVLIQGKRVAENRVRRGRAAGMALGSGQ 72
Query: 282 -EPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESSVKDETESFWLMRNDLR 458
EPKWA VSSYCK+HGVNR PVQCRKRWSNLAGDYKKIKEWES +K+ETES+W+MRND+R
Sbjct: 73 MEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETESYWVMRNDVR 132
Query: 459 RERKLPGYFDREVYDVLDAPALPVAATVVPAIEMAP 566
RE+KLPG+FD+EVYD++D +P A V+ ++ +AP
Sbjct: 133 REKKLPGFFDKEVYDIVDGGVIPPAVPVL-SLGLAP 167
>ref|NP_180913.2| hypothetical protein; protein id: At2g33550.1, supported by cDNA:
gi_17529157, supported by cDNA: gi_20465850 [Arabidopsis
thaliana] gi|17529158|gb|AAL38805.1| unknown protein
[Arabidopsis thaliana] gi|20465851|gb|AAM20030.1|
unknown protein [Arabidopsis thaliana]
Length = 314
Score = 213 bits (542), Expect = 2e-54
Identities = 104/156 (66%), Positives = 124/156 (78%), Gaps = 3/156 (1%)
Frame = +3
Query: 108 IDGAVNGSPPFAAASDER-PTARLPRWTRQEILVLIQGKADAESRFKPGRAAGSAFGSS- 281
+DG N S P D+ TARLPRWTRQEILVLIQGK AE+R + GRAAG A GS
Sbjct: 13 VDGGENSSAPSNDGGDDGVKTARLPRWTRQEILVLIQGKRVAENRVRRGRAAGMALGSGQ 72
Query: 282 -EPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESSVKDETESFWLMRNDLR 458
EPKWA VSSYCK+HGVNR PVQCRKRWSNLAGDYKKIKEWES +K+ETES+W+MRND+R
Sbjct: 73 MEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETESYWVMRNDVR 132
Query: 459 RERKLPGYFDREVYDVLDAPALPVAATVVPAIEMAP 566
RE+KLPG+FD+EVYD++D +P A V+ ++ +AP
Sbjct: 133 REKKLPGFFDKEVYDIVDGGVIPPAVPVL-SLGLAP 167
>dbj|BAB89675.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|20805231|dbj|BAB92898.1| OSJNBa0093F16.18 [Oryza
sativa (japonica cultivar-group)]
Length = 298
Score = 117 bits (294), Expect = 9e-26
Identities = 70/160 (43%), Positives = 85/160 (52%), Gaps = 26/160 (16%)
Frame = +3
Query: 108 IDGAVNGSPPFAAASDERPTARLPRWTRQEILVLIQGKADAESRFKPGRAAGSAFGSSEP 287
+ GA N + P A A P +RLPRWTR E LVL+Q + E R GR S +P
Sbjct: 1 MSGAANATSPAAGAGT--PRSRLPRWTRHETLVLLQARRAMEHR---GRR------SPQP 49
Query: 288 ---KWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESSV--------------- 413
KWA VS+YC++HGV R P+QCRKRW NL+ D KKI WE ++
Sbjct: 50 VRLKWAAVSTYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKNLAAVVSGAGDNAVAAG 109
Query: 414 --------KDETESFWLMRNDLRRERKLPGYFDREVYDVL 509
ESFW MR + RR R+LP FDREVYD L
Sbjct: 110 EGEGEAPPPPRLESFWDMRGEQRRARQLPSSFDREVYDAL 149
>ref|NP_181107.1| unknown protein; protein id: At2g35640.1 [Arabidopsis thaliana]
gi|25408399|pir||B84771 hypothetical protein At2g35640
[imported] - Arabidopsis thaliana
gi|4263796|gb|AAD15456.1| unknown protein [Arabidopsis
thaliana]
Length = 340
Score = 74.7 bits (182), Expect = 9e-13
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 13/141 (9%)
Frame = +3
Query: 171 RLPRWTRQEILVLIQGKADAESRFKPGRAAGSAFGSSEP---KWALVSSYCKKHGVNREP 341
R WT E LVLI+ K + R + R+ G ++P +W + YC + G R
Sbjct: 18 RKGNWTVSETLVLIEAKKMDDQR-RVRRSEKQPEGRNKPAELRWKWIEEYCWRRGCYRNQ 76
Query: 342 VQCRKRWSNLAGDYKKIKEWESSVKDE------TESFWLMRNDLRRERKLPGYFDREVYD 503
QC +W NL DYKKI+E+E S + + S+W M R+E+ LP ++YD
Sbjct: 77 NQCNDKWDNLMRDYKKIREYERSRVESSFNTVTSSSYWKMDKTERKEKNLPSNMLPQIYD 136
Query: 504 VL----DAPALPVAATVVPAI 554
VL D LP +++ A+
Sbjct: 137 VLSELVDRKTLPSSSSAAAAV 157
>dbj|BAC43269.1| unknown protein [Arabidopsis thaliana] gi|28950855|gb|AAO63351.1|
At4g31270 [Arabidopsis thaliana]
Length = 294
Score = 74.3 bits (181), Expect = 1e-12
Identities = 38/113 (33%), Positives = 60/113 (52%)
Frame = +3
Query: 177 PRWTRQEILVLIQGKADAESRFKPGRAAGSAFGSSEPKWALVSSYCKKHGVNREPVQCRK 356
P W ++ LVL+ A E A S SS KW +++ C V+R QCR+
Sbjct: 17 PEWAVKDCLVLVNEIAAVE-------ADCSNALSSFQKWTMITENCNALDVSRNLNQCRR 69
Query: 357 RWSNLAGDYKKIKEWESSVKDETESFWLMRNDLRRERKLPGYFDREVYDVLDA 515
+W +L DY +IK+WES + S+W + +D R+ LPG D E+++ ++A
Sbjct: 70 KWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELFEAINA 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,927,484
Number of Sequences: 1393205
Number of extensions: 16248845
Number of successful extensions: 181118
Number of sequences better than 10.0: 4012
Number of HSP's better than 10.0 without gapping: 87069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140997
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
