Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015516A_C01 KMC015516A_c01
(469 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190747.1| putative transmembrane protein G1p; protein id:... 86 1e-16
gb|AAK20057.1|AC025783_17 putative cytochrome c-type biogenesis ... 71 6e-12
gb|ZP_00011498.1| hypothetical protein [Rhodopseudomonas palustris] 44 0.001
gb|ZP_00056248.1| hypothetical protein [Magnetospirillum magneto... 42 0.004
ref|NP_715899.1| cytochrome c biogenesis protein CcmE [Shewanell... 40 0.009
>ref|NP_190747.1| putative transmembrane protein G1p; protein id: At3g51790.1,
supported by cDNA: gi_1657614 [Arabidopsis thaliana]
gi|11358692|pir||T51150 probable transmembrane protein
G1p [imported] - Arabidopsis thaliana
gi|1657615|gb|AAB18126.1| G1p [Arabidopsis thaliana]
gi|3068706|gb|AAC14406.1| putative transmembrane protein
G1p [Arabidopsis thaliana] gi|28416645|gb|AAO42853.1|
At3g51790 [Arabidopsis thaliana]
Length = 256
Score = 86.3 bits (212), Expect = 1e-16
Identities = 43/63 (68%), Positives = 49/63 (77%)
Frame = -3
Query: 467 KNEVSAKSVAAKARTGECYFAATEVLAKHDEKYMPTEVAAAIEKNKKIIEEAAGESVEET 288
+ EVS K ++ KAR +C+F+ATEVLAKHDEKYMP EVAAAIEKNKKIIE AA E E
Sbjct: 194 RKEVSTKPISKKARNLDCFFSATEVLAKHDEKYMPQEVAAAIEKNKKIIEAAATEQAAEV 253
Query: 287 TAS 279
AS
Sbjct: 254 AAS 256
>gb|AAK20057.1|AC025783_17 putative cytochrome c-type biogenesis protein [Oryza sativa
(japonica cultivar-group)]
Length = 267
Score = 70.9 bits (172), Expect = 6e-12
Identities = 36/67 (53%), Positives = 47/67 (69%), Gaps = 4/67 (5%)
Frame = -3
Query: 467 KNEVSAKSVAAKARTGECYFAATEVLAKHDEKYMPTEVAAAIEKNKKIIEE----AAGES 300
+ + + + V+ KAR EC+F+ATEVLAKHDEKYMP EV A+E+NKK +EE AA S
Sbjct: 191 RRDTAGRKVSDKARDCECFFSATEVLAKHDEKYMPKEVGEALERNKKKLEEEAAAAAAAS 250
Query: 299 VEETTAS 279
E TA+
Sbjct: 251 QESATAA 257
>gb|ZP_00011498.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 167
Score = 43.5 bits (101), Expect = 0.001
Identities = 23/43 (53%), Positives = 29/43 (66%)
Frame = -3
Query: 410 FAATEVLAKHDEKYMPTEVAAAIEKNKKIIEEAAGESVEETTA 282
F A VLAKHDEKYMP EVA A++K+ ++ +S ETTA
Sbjct: 113 FEADTVLAKHDEKYMPKEVADALKKDGHWKDDYGKKSPGETTA 155
>gb|ZP_00056248.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 146
Score = 41.6 bits (96), Expect = 0.004
Identities = 18/27 (66%), Positives = 23/27 (84%)
Frame = -3
Query: 413 YFAATEVLAKHDEKYMPTEVAAAIEKN 333
+F A+EVLAKHDE YMP EVA A++K+
Sbjct: 111 HFKASEVLAKHDENYMPKEVAEALKKS 137
>ref|NP_715899.1| cytochrome c biogenesis protein CcmE [Shewanella oneidensis MR-1]
gi|2865533|gb|AAC02697.1| cytochrome c maturation
protein E [Shewanella putrefaciens]
gi|24345674|gb|AAN53344.1|AE015474_7 cytochrome c
biogenesis protein CcmE [Shewanella oneidensis MR-1]
Length = 161
Score = 40.4 bits (93), Expect = 0.009
Identities = 20/29 (68%), Positives = 25/29 (85%), Gaps = 1/29 (3%)
Frame = -3
Query: 407 AATEVLAKHDEKYMPTEVAAAI-EKNKKI 324
AATEVLAKHDE YMP EVA A+ +K++K+
Sbjct: 123 AATEVLAKHDENYMPPEVAEAMGQKHEKL 151
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,981,112
Number of Sequences: 1393205
Number of extensions: 8384385
Number of successful extensions: 22034
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 21158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22000
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
