Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015482A_C01 KMC015482A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61570.1| unknown [Arabidopsis thaliana] 213 2e-54
ref|NP_566704.1| expressed protein; protein id: At3g22260.1, sup... 213 2e-54
emb|CAD40682.1| OSJNBb0118P14.20 [Oryza sativa (japonica cultiva... 192 2e-48
ref|NP_186856.1| unknown protein; protein id: At3g02070.1 [Arabi... 182 2e-45
ref|NP_568136.1| putative protein; protein id: At5g04250.1, supp... 162 3e-39
>gb|AAM61570.1| unknown [Arabidopsis thaliana]
Length = 240
Score = 213 bits (541), Expect = 2e-54
Identities = 97/127 (76%), Positives = 109/127 (85%)
Frame = -2
Query: 545 FRALADQLFGNPEYHKHVRRQVIKQLKHHKKLYESYVPMEYKSYLKKMKKSGEWGDHVTL 366
FRALADQLF N +YHKHVR+ V+KQLK +KLYE YVPM+Y+ Y +KMKK GEWGDHVTL
Sbjct: 114 FRALADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKYRHYTRKMKKHGEWGDHVTL 173
Query: 365 QAAADRFEAKICLVTSFRDTYYIEILPTNKRLTRELWLSFWSEVHYNSLYSTGDVPSRAP 186
QAAADRFEAKICLVTSFRD YIEILP NK RE WLSFWSEVHYNSLY+ GDVP+R P
Sbjct: 174 QAAADRFEAKICLVTSFRDQSYIEILPHNKNPLREAWLSFWSEVHYNSLYANGDVPTRKP 233
Query: 185 KKKYWLF 165
++K+WLF
Sbjct: 234 RRKHWLF 240
>ref|NP_566704.1| expressed protein; protein id: At3g22260.1, supported by cDNA:
124466. [Arabidopsis thaliana]
Length = 240
Score = 213 bits (541), Expect = 2e-54
Identities = 97/127 (76%), Positives = 109/127 (85%)
Frame = -2
Query: 545 FRALADQLFGNPEYHKHVRRQVIKQLKHHKKLYESYVPMEYKSYLKKMKKSGEWGDHVTL 366
FRALADQLF N +YHKHVR+ V+KQLK +KLYE YVPM+Y+ Y +KMKK GEWGDHVTL
Sbjct: 114 FRALADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKYRHYTRKMKKHGEWGDHVTL 173
Query: 365 QAAADRFEAKICLVTSFRDTYYIEILPTNKRLTRELWLSFWSEVHYNSLYSTGDVPSRAP 186
QAAADRFEAKICLVTSFRD YIEILP NK RE WLSFWSEVHYNSLY+ GDVP+R P
Sbjct: 174 QAAADRFEAKICLVTSFRDQSYIEILPHNKNPLREAWLSFWSEVHYNSLYANGDVPTRKP 233
Query: 185 KKKYWLF 165
++K+WLF
Sbjct: 234 RRKHWLF 240
>emb|CAD40682.1| OSJNBb0118P14.20 [Oryza sativa (japonica cultivar-group)]
Length = 225
Score = 192 bits (488), Expect = 2e-48
Identities = 87/127 (68%), Positives = 107/127 (83%), Gaps = 1/127 (0%)
Frame = -2
Query: 545 FRALADQLFGNPEYHKHVRRQVIKQLKHHKKLYESYVPMEYKSYLKKMKKSGEWGDHVTL 366
FRAL+DQL+ +P+YHKHVR++++KQLK LYE YVPM+YK Y KKMKKSGEWGDHVTL
Sbjct: 97 FRALSDQLYRSPDYHKHVRKEIVKQLKACNSLYEGYVPMKYKHYCKKMKKSGEWGDHVTL 156
Query: 365 QAAADRFEAKICLVTSFRDTYYIEILPTNKRLTRELWLSFWSEVHYNSLYSTGDVPSR-A 189
QAAAD+F AKICL+TSFRDT ++EI+P + RE+WLSFWSEVHYNSLY D+PS+
Sbjct: 157 QAAADKFAAKICLLTSFRDTCFVEIVPQYQAPQREIWLSFWSEVHYNSLYDARDLPSKYK 216
Query: 188 PKKKYWL 168
P+KK+WL
Sbjct: 217 PRKKHWL 223
>ref|NP_186856.1| unknown protein; protein id: At3g02070.1 [Arabidopsis thaliana]
gi|6513925|gb|AAF14829.1|AC011664_11 unknown protein
[Arabidopsis thaliana]
Length = 219
Score = 182 bits (462), Expect = 2e-45
Identities = 86/128 (67%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Frame = -2
Query: 545 FRALADQLFGNPEYHKHVRRQVIKQLKHHKKLYESYVPMEYKSYLKKMKKSGEWGDHVTL 366
FRAL+DQL+ +PEYHK VRR+V+KQLK + +YESYVPM+YK Y KKM K GEWGDH+TL
Sbjct: 92 FRALSDQLYRSPEYHKQVRREVVKQLKECRSMYESYVPMKYKRYYKKMGKFGEWGDHITL 151
Query: 365 QAAADRFEAKICLVTSFRDTYYIEILPTNKRLTRELWLSFWSEVHYNSLYSTGDVP-SRA 189
QAAADRF AKICL+TSFRDT +IEI+P + LWLSFWSEVHYNSLY P
Sbjct: 152 QAAADRFAAKICLLTSFRDTCFIEIIPQYQAPKGVLWLSFWSEVHYNSLYDIQAAPVQHK 211
Query: 188 PKKKYWLF 165
PK+K+WLF
Sbjct: 212 PKRKHWLF 219
>ref|NP_568136.1| putative protein; protein id: At5g04250.1, supported by cDNA:
29990. [Arabidopsis thaliana] gi|21592575|gb|AAM64524.1|
unknown [Arabidopsis thaliana]
Length = 345
Score = 162 bits (409), Expect = 3e-39
Identities = 73/129 (56%), Positives = 99/129 (76%), Gaps = 2/129 (1%)
Frame = -2
Query: 545 FRALADQLFGNPEYHKHVRRQVIKQLKHHKKLYESYVPMEYKSYLKKMKKSGEWGDHVTL 366
FR+L+DQL+ +PE+H VR QV+ QL +++++YE YVPM Y YLK MK++GEWGDHVTL
Sbjct: 217 FRSLSDQLYRSPEHHNFVREQVVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTL 276
Query: 365 QAAADRFEAKICLVTSFRDTYYIEILPTNKRLTRELWLSFWSEVHYNSLYSTGD--VPSR 192
QAAAD F ++ ++TSF+DT YIEILP ++ R + LSFW+EVHYNS+Y G+ +P
Sbjct: 277 QAAADLFGVRMFVITSFKDTCYIEILPHFQKSNRLICLSFWAEVHYNSIYPEGELPIPEG 336
Query: 191 APKKKYWLF 165
KKKYW+F
Sbjct: 337 KKKKKYWVF 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,595,193
Number of Sequences: 1393205
Number of extensions: 8621326
Number of successful extensions: 18722
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 18201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18700
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
