Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015474A_C01 KMC015474A_c01
(826 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P31164|RK11_SPIOL 50S RIBOSOMAL PROTEIN L11, CHLOROPLAST PREC... 182 4e-45
ref|NP_174575.1| ribosomal protein L11, putative; protein id: At... 181 2e-44
dbj|BAB21483.1| plastid ribosomal protein L11 [Oryza sativa (jap... 172 5e-42
gb|AAN74828.1| Putative plastid ribosomal protein L11 [Oryza sat... 172 5e-42
emb|CAA60718.1| ribosomal protein L11 [Arabidopsis thaliana] 138 9e-32
>sp|P31164|RK11_SPIOL 50S RIBOSOMAL PROTEIN L11, CHLOROPLAST PRECURSOR (CL11)
gi|279648|pir||R5SP11 ribosomal protein L11 precursor -
spinach gi|21313|emb|CAA39950.1| ribosomal protein L11
[Spinacia oleracea]
Length = 224
Score = 182 bits (463), Expect = 4e-45
Identities = 89/108 (82%), Positives = 100/108 (92%)
Frame = -2
Query: 825 TADKPGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKMQKVGKVTIDQV 646
TADKPG+VIPVEITV+DDKSFTFILKTPPASVLLLKA+G EKGSKDP+M+KVGK+TIDQ+
Sbjct: 117 TADKPGFVIPVEITVFDDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQL 176
Query: 645 RTIATEKLPDLNCSTLESAMRIIAGTAANMEIDVDPPVLEPKIKEAAF 502
R IATEKLPDLNC+T+ESAMRIIAGTAANM ID+DPP+L K KE F
Sbjct: 177 RGIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKEVIF 224
>ref|NP_174575.1| ribosomal protein L11, putative; protein id: At1g32990.1, supported
by cDNA: 16773., supported by cDNA: gi_13358212,
supported by cDNA: gi_13877982, supported by cDNA:
gi_15724329, supported by cDNA: gi_17104710 [Arabidopsis
thaliana] gi|25295157|pir||E86454 hypothetical protein
F9L11.15 - Arabidopsis thaliana
gi|6910575|gb|AAF31280.1|AC006424_9 Very similar to
Spinacia oleracea 50S ribosomal p> [Arabidopsis
thaliana] gi|11762194|gb|AAG40375.1|AF325023_1 At1g32990
[Arabidopsis thaliana]
gi|13877983|gb|AAK44069.1|AF370254_1 putative ribosomal
protein L11 [Arabidopsis thaliana]
gi|15724330|gb|AAL06558.1|AF412105_1 At1g32990/F9L11_15
[Arabidopsis thaliana] gi|17104711|gb|AAL34244.1|
putative ribosomal protein L11 [Arabidopsis thaliana]
gi|21553791|gb|AAM62884.1| ribosomal protein L11,
putative [Arabidopsis thaliana]
Length = 222
Score = 181 bits (458), Expect = 2e-44
Identities = 88/104 (84%), Positives = 97/104 (92%)
Frame = -2
Query: 825 TADKPGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKMQKVGKVTIDQV 646
TADK GY+IPVEITV+DDKSFTFILKTPPASVLLLKAAGVEKGSKDP+ KVG +TIDQ+
Sbjct: 115 TADKAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQL 174
Query: 645 RTIATEKLPDLNCSTLESAMRIIAGTAANMEIDVDPPVLEPKIK 514
RTIA EKLPDLNC+T+ESAMRIIAGTAANM ID+DPP+LEPK K
Sbjct: 175 RTIAAEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILEPKKK 218
>dbj|BAB21483.1| plastid ribosomal protein L11 [Oryza sativa (japonica
cultivar-group)]
Length = 210
Score = 172 bits (436), Expect = 5e-42
Identities = 84/104 (80%), Positives = 96/104 (91%)
Frame = -2
Query: 825 TADKPGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKMQKVGKVTIDQV 646
TA+K GY+IPVEITV+DDKSFTFILKTPPASVLLLKAAG+EKGSK+P+ +KVGKVT DQV
Sbjct: 104 TAEKAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGIEKGSKEPQREKVGKVTADQV 163
Query: 645 RTIATEKLPDLNCSTLESAMRIIAGTAANMEIDVDPPVLEPKIK 514
RTIA EKLPDLNC +++SAMRIIAGTAANM I+VDPP+LE K K
Sbjct: 164 RTIAQEKLPDLNCKSIDSAMRIIAGTAANMGIEVDPPILEKKEK 207
>gb|AAN74828.1| Putative plastid ribosomal protein L11 [Oryza sativa (japonica
cultivar-group)]
Length = 221
Score = 172 bits (436), Expect = 5e-42
Identities = 84/104 (80%), Positives = 96/104 (91%)
Frame = -2
Query: 825 TADKPGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKMQKVGKVTIDQV 646
TA+K GY+IPVEITV+DDKSFTFILKTPPASVLLLKAAG+EKGSK+P+ +KVGKVT DQV
Sbjct: 104 TAEKAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGIEKGSKEPQREKVGKVTADQV 163
Query: 645 RTIATEKLPDLNCSTLESAMRIIAGTAANMEIDVDPPVLEPKIK 514
RTIA EKLPDLNC +++SAMRIIAGTAANM I+VDPP+LE K K
Sbjct: 164 RTIAQEKLPDLNCKSIDSAMRIIAGTAANMGIEVDPPILEKKEK 207
>emb|CAA60718.1| ribosomal protein L11 [Arabidopsis thaliana]
Length = 222
Score = 138 bits (348), Expect = 9e-32
Identities = 69/104 (66%), Positives = 80/104 (76%)
Frame = -2
Query: 825 TADKPGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKMQKVGKVTIDQV 646
TADK GY+IPVEITV+D ++ + LK GVEKGSKDP+ KVG +TID V
Sbjct: 115 TADKAGYIIPVEITVFDIRASRLFSRPRLLRFCCLKLQGVEKGSKDPQQDKVGVITIDHV 174
Query: 645 RTIATEKLPDLNCSTLESAMRIIAGTAANMEIDVDPPVLEPKIK 514
RTIA EKLPDLNC+T+ESAMRIIAGTAANM ID+DPP+LEPK K
Sbjct: 175 RTIAAEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILEPKKK 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 659,092,873
Number of Sequences: 1393205
Number of extensions: 13696201
Number of successful extensions: 28804
Number of sequences better than 10.0: 194
Number of HSP's better than 10.0 without gapping: 28064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28785
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42857050626
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
