Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015469A_C01 KMC015469A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM66945.1| unknown [Arabidopsis thaliana] 133 1e-30
ref|NP_566461.1| expressed protein; protein id: At3g13720.1, sup... 132 3e-30
ref|NP_187984.1| unknown protein; protein id: At3g13710.1 [Arabi... 128 6e-29
ref|NP_564679.1| expressed protein; protein id: At1g55190.1, sup... 125 5e-28
dbj|BAB56085.1| P0419B01.1 [Oryza sativa (japonica cultivar-group)] 124 1e-27
>gb|AAM66945.1| unknown [Arabidopsis thaliana]
Length = 188
Score = 133 bits (335), Expect = 1e-30
Identities = 65/103 (63%), Positives = 83/103 (80%)
Frame = -3
Query: 573 ALVVLLVIFVSLIWHPISLIVFLALMAVWVFLYFLRDEPLVIFGRLISDRVVLVLMAILT 394
A+VVL+VIF SLIWHP SLIVF L+ VW+FLYFLRDEP+ +F I DR VL+++++LT
Sbjct: 73 AIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLT 132
Query: 393 VGLLLLTGATLNILISLLVGVVLVVIHAAFRRTDDLFVDEEEA 265
V LLLLT AT NI+ +L+ G VLV+IHA R+T+DLF+DEE A
Sbjct: 133 VVLLLLTNATFNIVGALVTGAVLVLIHAVVRKTEDLFLDEEAA 175
>ref|NP_566461.1| expressed protein; protein id: At3g13720.1, supported by cDNA:
8544. [Arabidopsis thaliana] gi|9294018|dbj|BAB01921.1|
gb|AAC14054.1~gene_id:MMM17.14~similar to unknown
protein [Arabidopsis thaliana]
gi|28393547|gb|AAO42194.1| unknown protein [Arabidopsis
thaliana] gi|28827282|gb|AAO50485.1| unknown protein
[Arabidopsis thaliana]
Length = 188
Score = 132 bits (332), Expect = 3e-30
Identities = 64/103 (62%), Positives = 83/103 (80%)
Frame = -3
Query: 573 ALVVLLVIFVSLIWHPISLIVFLALMAVWVFLYFLRDEPLVIFGRLISDRVVLVLMAILT 394
A+VVL+VIF SLIWHP SLIVF L+ VW+FLYFLRDEP+ +F I DR VL+++++LT
Sbjct: 73 AIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLT 132
Query: 393 VGLLLLTGATLNILISLLVGVVLVVIHAAFRRTDDLFVDEEEA 265
V LLLLT AT NI+ +L+ G VLV+IH+ R+T+DLF+DEE A
Sbjct: 133 VVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAA 175
>ref|NP_187984.1| unknown protein; protein id: At3g13710.1 [Arabidopsis thaliana]
gi|9294017|dbj|BAB01920.1|
gb|AAC14054.1~gene_id:MMM17.13~similar to unknown
protein [Arabidopsis thaliana]
Length = 188
Score = 128 bits (321), Expect = 6e-29
Identities = 62/103 (60%), Positives = 80/103 (77%)
Frame = -3
Query: 573 ALVVLLVIFVSLIWHPISLIVFLALMAVWVFLYFLRDEPLVIFGRLISDRVVLVLMAILT 394
A+V+L VIF SLIWHP SLIVF L+ +W+FLYFLRD PL +F I DR VL+ ++++T
Sbjct: 73 AIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLSVIT 132
Query: 393 VGLLLLTGATLNILISLLVGVVLVVIHAAFRRTDDLFVDEEEA 265
+ LLLLT AT NI+ +L+ G VLV+IHA R+TDDLF+DEE A
Sbjct: 133 IVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAA 175
>ref|NP_564679.1| expressed protein; protein id: At1g55190.1, supported by cDNA:
21940. [Arabidopsis thaliana] gi|25347725|pir||F96593
hypothetical protein F7A10.20 [imported] - Arabidopsis
thaliana gi|12323168|gb|AAG51564.1|AC027034_10
hypothetical protein; 89971-89402 [Arabidopsis thaliana]
gi|21554296|gb|AAM63371.1| unknown [Arabidopsis
thaliana] gi|28393384|gb|AAO42116.1| unknown protein
[Arabidopsis thaliana] gi|28827574|gb|AAO50631.1|
unknown protein [Arabidopsis thaliana]
Length = 189
Score = 125 bits (313), Expect = 5e-28
Identities = 63/103 (61%), Positives = 81/103 (78%)
Frame = -3
Query: 573 ALVVLLVIFVSLIWHPISLIVFLALMAVWVFLYFLRDEPLVIFGRLISDRVVLVLMAILT 394
A+ VL ++F+SL++HP SLIV L+ W+FLYFLRDEPLV+FG I DR VL+ +++LT
Sbjct: 73 AIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVLIGLSVLT 132
Query: 393 VGLLLLTGATLNILISLLVGVVLVVIHAAFRRTDDLFVDEEEA 265
V +LLLT AT NIL SLL VLV+IHAA RR+D+LF+DEE A
Sbjct: 133 VVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAA 175
>dbj|BAB56085.1| P0419B01.1 [Oryza sativa (japonica cultivar-group)]
Length = 317
Score = 124 bits (310), Expect = 1e-27
Identities = 59/100 (59%), Positives = 78/100 (78%)
Frame = -3
Query: 573 ALVVLLVIFVSLIWHPISLIVFLALMAVWVFLYFLRDEPLVIFGRLISDRVVLVLMAILT 394
A+VVL V+F+SL+WHP SLIVFL M W+ LYFLRDEP+V+FGR++ D VL +A +T
Sbjct: 88 AIVVLAVVFLSLLWHPASLIVFLVCMVAWLVLYFLRDEPIVLFGRVVGDGAVLAALAAVT 147
Query: 393 VGLLLLTGATLNILISLLVGVVLVVIHAAFRRTDDLFVDE 274
+ LLLLTGAT NI+ SLL+GV+LVV+HAA + ++ DE
Sbjct: 148 LVLLLLTGATANIVSSLLIGVLLVVLHAALHKAEENVDDE 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,448,622
Number of Sequences: 1393205
Number of extensions: 12706974
Number of successful extensions: 106792
Number of sequences better than 10.0: 1584
Number of HSP's better than 10.0 without gapping: 68487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95636
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
