Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015466A_C01 KMC015466A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568872.1| 26S proteasome regulatory subunit p27, putative... 101 4e-21
dbj|BAB08865.1| gene_id:MTI20.21~unknown protein [Arabidopsis th... 85 6e-16
gb|AAH41532.1| Similar to proteasome (prosome, macropain) 26S su... 57 9e-08
ref|NP_012259.1| Protein with similarity to the p27 subunit of m... 56 2e-07
ref|NP_569114.1| proteasome 26S non-ATPase subunit 9 [Rattus nor... 49 3e-05
>ref|NP_568872.1| 26S proteasome regulatory subunit p27, putative; protein id:
At5g57950.1, supported by cDNA: 3836. [Arabidopsis
thaliana] gi|21593363|gb|AAM65312.1| 26S proteasome
regulatory subunit p27, putative [Arabidopsis thaliana]
gi|26451944|dbj|BAC43064.1| unknown protein [Arabidopsis
thaliana] gi|28950773|gb|AAO63310.1| At5g57950
[Arabidopsis thaliana]
Length = 227
Score = 101 bits (252), Expect = 4e-21
Identities = 47/82 (57%), Positives = 62/82 (75%)
Frame = -1
Query: 509 VDEIADASPPVEDGLPLGDPILKFGHVEAGDDLLPRLSSESQSNLDRPIPVVITRPGTVV 330
VDEI ++SP E GL LGD +LKFG+VE GD+LL RL++E+QSN + + V + R G V
Sbjct: 146 VDEINESSPAAEGGLQLGDQVLKFGNVEGGDNLLQRLAAEAQSNQGQAVSVQVMRQGAKV 205
Query: 329 NLTITPRTWPGRGLLGCHFRIL 264
L++TPR W GRGLLGCHFR++
Sbjct: 206 VLSVTPRIWQGRGLLGCHFRLV 227
>dbj|BAB08865.1| gene_id:MTI20.21~unknown protein [Arabidopsis thaliana]
Length = 275
Score = 84.7 bits (208), Expect = 6e-16
Identities = 40/75 (53%), Positives = 54/75 (71%)
Frame = -1
Query: 509 VDEIADASPPVEDGLPLGDPILKFGHVEAGDDLLPRLSSESQSNLDRPIPVVITRPGTVV 330
VDEI ++SP E GL LGD +LKFG+VE GD+LL RL++E+QSN + + V + R G V
Sbjct: 175 VDEINESSPAAEGGLQLGDQVLKFGNVEGGDNLLQRLAAEAQSNQGQAVSVQVMRQGAKV 234
Query: 329 NLTITPRTWPGRGLL 285
L++TPR W GRG +
Sbjct: 235 VLSVTPRIWQGRGAI 249
>gb|AAH41532.1| Similar to proteasome (prosome, macropain) 26S subunit, non-ATPase,
9 [Xenopus laevis]
Length = 213
Score = 57.4 bits (137), Expect = 9e-08
Identities = 29/79 (36%), Positives = 44/79 (54%), Gaps = 1/79 (1%)
Frame = -1
Query: 509 VDEIADASPPVEDGLPLGDPILKFGHVEAGD-DLLPRLSSESQSNLDRPIPVVITRPGTV 333
VD + SP GL +GD I+ FG V + L ++ Q + +P+ V + R G +
Sbjct: 127 VDVVTPGSPASMSGLQVGDEIIAFGTVNTSNFQSLQNIAKVVQHSEGKPLSVSVIRNGKL 186
Query: 332 VNLTITPRTWPGRGLLGCH 276
V+L +TP W G+GLLGC+
Sbjct: 187 VSLALTPLRWSGKGLLGCN 205
>ref|NP_012259.1| Protein with similarity to the p27 subunit of mammalian proteasome
modulator; Nas2p [Saccharomyces cerevisiae]
gi|731776|sp|P40555|PSD9_YEAST Probable 26S proteasome
regulatory subunit p27 (Proteasome non-ATPase subunit 2)
gi|626358|pir||S48450 hypothetical protein YIL007c -
yeast (Saccharomyces cerevisiae)
gi|558397|emb|CAA86244.1| orf, len: 220, CAI=0.13
[Saccharomyces cerevisiae]
Length = 220
Score = 56.2 bits (134), Expect = 2e-07
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = -1
Query: 509 VDEIADASPPVEDGLPLGDPILKFGHVEAGD-DLLPRLSSESQSNLDRPIPVVITRPGTV 333
+ E+ SP + + + D ++ G+V A + L + N DRP+PV++ R G +
Sbjct: 137 ISEVVPGSPSDKADIKVDDKLISIGNVHAANHSKLQNIQMVVMKNEDRPLPVLLLREGQI 196
Query: 332 VNLTITP-RTWPGRGLLGCHFRIL 264
+ ++TP R W GRGLLGC + L
Sbjct: 197 LKTSLTPSRNWNGRGLLGCRIQEL 220
>ref|NP_569114.1| proteasome 26S non-ATPase subunit 9 [Rattus norvegicus]
gi|12229884|sp|Q9WTV5|PSD9_RAT 26S proteasome non-ATPase
regulatory subunit 9 (26S proteasome regulatory subunit
p27) (Transactivating protein Bridge-1)
gi|4914683|gb|AAD32925.1|AF067728_1 transactivating
protein BRIDGE [Rattus norvegicus]
Length = 222
Score = 49.3 bits (116), Expect = 3e-05
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = -1
Query: 509 VDEIADASPPVEDGLPLGDPILKFGHVEAGD-DLLPRLSSESQSNLDRPIPVVITRPGTV 333
V+ I+ SP GL + D I++FG V + L + + Q + +P+ V++ R G
Sbjct: 138 VNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNVGTVVQHSEGKPLNVMVIRRGEK 197
Query: 332 VNLTITPRTWPGRGLLGCH 276
L +TP W G+GLLGC+
Sbjct: 198 HQLRLTPTRWAGKGLLGCN 216
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,981,975
Number of Sequences: 1393205
Number of extensions: 9819977
Number of successful extensions: 29150
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 27905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29089
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
