Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015450A_C01 KMC015450A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_067285.1| junction-mediating and regulatory protein; p300... 39 0.059
pir||T02577 probable AP2 domain transcription factor [imported] ... 34 1.1
ref|NP_181458.2| apetala2 family protein (RAP2); protein id: At2... 34 1.1
gb|ZP_00024554.1| hypothetical protein [Ralstonia metallidurans] 34 1.1
ref|NP_702879.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.9
>ref|NP_067285.1| junction-mediating and regulatory protein; p300 transcriptional
cofactor JMY [Mus musculus]
gi|6573115|gb|AAF17555.1|AF201390_1 p300 transcriptional
cofactor JMY [Mus musculus]
Length = 983
Score = 38.5 bits (88), Expect = 0.059
Identities = 20/43 (46%), Positives = 23/43 (52%)
Frame = +1
Query: 364 NTNLPPCHHITLLQDINPK*GIDKVVTFHKLPPPSPPIPPSPP 492
++ LPP LL I+PK VT LPPP PP PP PP
Sbjct: 768 SSELPPPQSAPLLTSIDPK---PCSVTIDPLPPPLPPTPPPPP 807
>pir||T02577 probable AP2 domain transcription factor [imported] - Arabidopsis
thaliana gi|3402680|gb|AAC28983.1| putative AP2 domain
transcription factor [Arabidopsis thaliana]
Length = 236
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Frame = +1
Query: 352 NLDNNTNLPPCHHITLLQDINPK*GIDKVVTF-------HKLPPPSPPIPPSPPDEISVH 510
N D + +P I INP ++TF LPPP PP PP PP E +
Sbjct: 13 NEDEDCKVPTSIFIQEEDSINPSNDNLSLITFGILKRNVEILPPPPPPPPPPPPSENELS 72
Query: 511 G 513
G
Sbjct: 73 G 73
>ref|NP_181458.2| apetala2 family protein (RAP2); protein id: At2g39250.1, supported
by cDNA: gi_17065003, supported by cDNA: gi_20260075
[Arabidopsis thaliana] gi|17065004|gb|AAL32656.1|
putative AP2 domain transcription factor [Arabidopsis
thaliana] gi|20260076|gb|AAM13385.1| putative AP2 domain
transcription factor [Arabidopsis thaliana]
Length = 222
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Frame = +1
Query: 352 NLDNNTNLPPCHHITLLQDINPK*GIDKVVTF-------HKLPPPSPPIPPSPPDEISVH 510
N D + +P I INP ++TF LPPP PP PP PP E +
Sbjct: 13 NEDEDCKVPTSIFIQEEDSINPSNDNLSLITFGILKRNVEILPPPPPPPPPPPPSENELS 72
Query: 511 G 513
G
Sbjct: 73 G 73
>gb|ZP_00024554.1| hypothetical protein [Ralstonia metallidurans]
Length = 365
Score = 34.3 bits (77), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 400 LQDINPK*GIDKVVTFHKLPPPSPPIPPSPPDEI 501
L DI P +D ++ LPPP PP PP+PP +
Sbjct: 56 LPDIEPTPTLDAIL----LPPPKPPAPPAPPPPV 85
>ref|NP_702879.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498296|emb|CAD49268.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 217
Score = 33.5 bits (75), Expect = 1.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 445 FHKLPPPSPPIPPSPPDEISVHG 513
F LPPP PP+PP PP ++ G
Sbjct: 175 FTALPPPPPPVPPPPPPTLTPSG 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,804,537
Number of Sequences: 1393205
Number of extensions: 10768639
Number of successful extensions: 84947
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 43426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76153
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
