Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015449A_C01 KMC015449A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175962.1| F-box protein; protein id: At1g55660.1 [Arabido... 39 0.052
gb|AAF79496.1|AC002328_4 F20N2.9 [Arabidopsis thaliana] 39 0.052
ref|NP_635496.1| chloroacetaldehyde dehydrogenase [Xanthomonas c... 32 3.7
sp|P46368|DHA2_ALCEU Acetaldehyde dehydrogenase II (ACDH-II) gi|... 32 6.3
ref|NP_190472.1| F-box protein; protein id: At3g49030.1 [Arabido... 31 8.3
>ref|NP_175962.1| F-box protein; protein id: At1g55660.1 [Arabidopsis thaliana]
Length = 492
Score = 38.5 bits (88), Expect = 0.052
Identities = 22/58 (37%), Positives = 35/58 (59%), Gaps = 3/58 (5%)
Frame = -1
Query: 534 LKAEFQLARYVLKNARVLQSLTIFNERTI---SRRQIRKKLSSGLRSPSTSRCQLIIH 370
L+ + +A+Y+LKNAR L+S TIF T +R ++ ++LS + P T CQ+ H
Sbjct: 437 LQNQMDVAKYILKNARCLKSATIFFPTTYAQETRDEMIEELSLSFQGPET--CQVFFH 492
>gb|AAF79496.1|AC002328_4 F20N2.9 [Arabidopsis thaliana]
Length = 526
Score = 38.5 bits (88), Expect = 0.052
Identities = 22/58 (37%), Positives = 35/58 (59%), Gaps = 3/58 (5%)
Frame = -1
Query: 534 LKAEFQLARYVLKNARVLQSLTIFNERTI---SRRQIRKKLSSGLRSPSTSRCQLIIH 370
L+ + +A+Y+LKNAR L+S TIF T +R ++ ++LS + P T CQ+ H
Sbjct: 471 LQNQMDVAKYILKNARCLKSATIFFPTTYAQETRDEMIEELSLSFQGPET--CQVFFH 526
>ref|NP_635496.1| chloroacetaldehyde dehydrogenase [Xanthomonas campestris pv.
campestris str. ATCC 33913] gi|21111050|gb|AAM39420.1|
chloroacetaldehyde dehydrogenase [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 509
Score = 32.3 bits (72), Expect = 3.7
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 254 CSCPSRFILQTTKYHSFM*KLIKRLSGYR 340
C+CPSR ++Q + Y +FM K +KR++ +
Sbjct: 304 CTCPSRALIQESIYDTFMEKALKRVAAIK 332
>sp|P46368|DHA2_ALCEU Acetaldehyde dehydrogenase II (ACDH-II) gi|281760|pir||A42597
aldehyde dehydrogenase (NAD) (EC 1.2.1.3) [validated] -
Alcaligenes eutrophus gi|141886|gb|AAA21943.1|
acetaldehyde dehydrogenase II
Length = 506
Score = 31.6 bits (70), Expect = 6.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 254 CSCPSRFILQTTKYHSFM*KLIKRLSGYR 340
C+CPSR ++Q + Y FM + +KR++ R
Sbjct: 301 CTCPSRALIQESIYDRFMERALKRVAAIR 329
>ref|NP_190472.1| F-box protein; protein id: At3g49030.1 [Arabidopsis thaliana]
gi|11358278|pir||T46127 hypothetical protein T2J13.130 -
Arabidopsis thaliana gi|6522563|emb|CAB62007.1| putative
protein [Arabidopsis thaliana]
Length = 443
Score = 31.2 bits (69), Expect = 8.3
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = -1
Query: 525 EFQLARYVLKNARVLQSLTIFNER-----TISRRQIRKKLSSGLRSPSTSRCQLIIHPI 364
E ++A Y+L+NAR+L+ T +R RR++ +L+S R ++ C L+ H I
Sbjct: 387 EKEVATYILENARLLKKATFSTKRIDLENLEKRREMLNELASVAR--ASDSCHLVFHSI 443
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,789,638
Number of Sequences: 1393205
Number of extensions: 8263617
Number of successful extensions: 14393
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14387
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
