Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015447A_C01 KMC015447A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02758|ATPD_PEA ATP synthase delta chain, chloroplast precurs... 220 1e-56
sp|P32980|ATPD_TOBAC ATP synthase delta chain, chloroplast precu... 176 1e-43
gb|AAL69493.1| putative H+-transporting ATP synthase [Arabidopsi... 172 4e-42
ref|NP_192703.1| H+-transporting ATP synthase-like protein; prot... 169 2e-41
sp|P11402|ATPD_SPIOL ATP synthase delta chain, chloroplast precu... 169 3e-41
>sp|Q02758|ATPD_PEA ATP synthase delta chain, chloroplast precursor
gi|322713|pir||S28171 H+-transporting two-sector ATPase
(EC 3.6.3.14) delta chain precursor, chloroplast -
garden pea gi|169045|gb|AAA33647.1| ATP synthase delta
subunit
Length = 251
Score = 220 bits (560), Expect = 1e-56
Identities = 123/188 (65%), Positives = 146/188 (77%), Gaps = 5/188 (2%)
Frame = +3
Query: 39 SSLQHATASIQA--IPTTRNILTQKPILNLSLPSSTFTPLNLKLVSVAP---SRRSGGGA 203
+SLQH TAS+ + IP T NILT+KPILNLS SSTF LKL P +RRS GGA
Sbjct: 2 ASLQHTTASLHSKHIPKTTNILTRKPILNLS--SSTFYSPKLKLKLKLPLTKTRRSTGGA 59
Query: 204 LGARMNASAATSYASALADVASSNKSLDATTADVEKLETLFSDAKVFDYFSNPTVRIEDK 383
LGARM++ AA SYA+ALAD+A+SN +LDA TAD +K+E LFSD KVFDYFS+P V K
Sbjct: 60 LGARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTK 119
Query: 384 RKLIDDIAKSSELQPHTRNFLYILIDSQRIDLIIEIVKEYELVYNTLTDTELAVVTSVVK 563
R+LI + A +S QPHT NFL +LIDS+RID+II+I+KE+E VYNTLTDTEL VVTSVVK
Sbjct: 120 RQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVK 179
Query: 564 LESQHLAQ 587
LES HLAQ
Sbjct: 180 LESHHLAQ 187
>sp|P32980|ATPD_TOBAC ATP synthase delta chain, chloroplast precursor
gi|280404|pir||S26198 H+-transporting two-sector ATPase
(EC 3.6.3.14) delta chain precursor, chloroplast -
common tobacco gi|19787|emb|CAA45153.1| chloroplast ATP
synthase (delta subunit) [Nicotiana tabacum]
Length = 248
Score = 176 bits (447), Expect = 1e-43
Identities = 100/184 (54%), Positives = 127/184 (68%), Gaps = 1/184 (0%)
Frame = +3
Query: 39 SSLQHATASIQAIPTTRNILTQKPILNLSLPSSTFTP-LNLKLVSVAPSRRSGGGALGAR 215
++LQ + Q+ + P LS P L +KL S SRR GGGA G++
Sbjct: 2 AALQQTPITFQSRSPPPTQIISGPTAKLSFSGGLKLPKLTIKLRSNRTSRR-GGGAAGSK 60
Query: 216 MNASAATSYASALADVASSNKSLDATTADVEKLETLFSDAKVFDYFSNPTVRIEDKRKLI 395
M ASAA SYA+ALAD+A SN +L+ TTAD+EK+E + D VF++F +P V E KR+L+
Sbjct: 61 MVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELV 120
Query: 396 DDIAKSSELQPHTRNFLYILIDSQRIDLIIEIVKEYELVYNTLTDTELAVVTSVVKLESQ 575
D+I SS +QPH NFL IL+D +R++LI EIVKE+E VYNTLTDTELAVVTSVVKLESQ
Sbjct: 121 DEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQ 180
Query: 576 HLAQ 587
HLAQ
Sbjct: 181 HLAQ 184
>gb|AAL69493.1| putative H+-transporting ATP synthase [Arabidopsis thaliana]
Length = 250
Score = 172 bits (435), Expect = 4e-42
Identities = 94/177 (53%), Positives = 126/177 (71%), Gaps = 4/177 (2%)
Frame = +3
Query: 69 QAIPTTRNILTQKPILNLS--LPSSTFT-PLNLKLVSVAPSR-RSGGGALGARMNASAAT 236
Q + TT Q+ + +L LP S+F +L L P R +GG A GARM+A+AA+
Sbjct: 10 QTLSTTTMASLQQTLFSLQSKLPPSSFQIARSLPLRKTFPIRINNGGNAAGARMSATAAS 69
Query: 237 SYASALADVASSNKSLDATTADVEKLETLFSDAKVFDYFSNPTVRIEDKRKLIDDIAKSS 416
SYA ALADVA N +++ T D+EKLE +FSD +V ++F+NPT+ +E KR++IDDI KSS
Sbjct: 70 SYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSS 129
Query: 417 ELQPHTRNFLYILIDSQRIDLIIEIVKEYELVYNTLTDTELAVVTSVVKLESQHLAQ 587
LQ HT NFL +L+D+ RI+++ EIVKE+ELVYN LTDT+LA V SVVKLE+ LAQ
Sbjct: 130 SLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQ 186
>ref|NP_192703.1| H+-transporting ATP synthase-like protein; protein id: At4g09650.1,
supported by cDNA: 39471., supported by cDNA:
gi_17473799 [Arabidopsis thaliana]
gi|25290486|pir||G85098 H+-transporting ATP
synthase-like protein [imported] - Arabidopsis thaliana
gi|7267660|emb|CAB78088.1| H+-transporting ATP
synthase-like protein [Arabidopsis thaliana]
gi|7321084|emb|CAB82132.1| H+-transporting ATP
synthase-like protein [Arabidopsis thaliana]
gi|17473800|gb|AAL38334.1| H+-transporting ATP
synthase-like protein [Arabidopsis thaliana]
gi|21386985|gb|AAM47896.1| H+-transporting ATP
synthase-like protein [Arabidopsis thaliana]
gi|21593484|gb|AAM65451.1| H+-transporting ATP
synthase-like protein [Arabidopsis thaliana]
gi|21689783|gb|AAM67535.1| putative H+-transporting ATP
synthase [Arabidopsis thaliana]
Length = 234
Score = 169 bits (429), Expect = 2e-41
Identities = 90/160 (56%), Positives = 118/160 (73%), Gaps = 2/160 (1%)
Frame = +3
Query: 114 LNLSLPSSTFT-PLNLKLVSVAPSR-RSGGGALGARMNASAATSYASALADVASSNKSLD 287
L LP S+F +L L P R +GG A GARM+A+AA+SYA ALADVA N +++
Sbjct: 11 LQSKLPPSSFQIARSLPLRKTFPIRINNGGNAAGARMSATAASSYAMALADVAKRNDTME 70
Query: 288 ATTADVEKLETLFSDAKVFDYFSNPTVRIEDKRKLIDDIAKSSELQPHTRNFLYILIDSQ 467
T D+EKLE +FSD +V ++F+NPT+ +E KR++IDDI KSS LQ HT NFL +L+D+
Sbjct: 71 LTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSSSLQSHTSNFLNVLVDAN 130
Query: 468 RIDLIIEIVKEYELVYNTLTDTELAVVTSVVKLESQHLAQ 587
RI+++ EIVKE+ELVYN LTDT+LA V SVVKLE+ LAQ
Sbjct: 131 RINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQ 170
>sp|P11402|ATPD_SPIOL ATP synthase delta chain, chloroplast precursor gi|67857|pir||PWSPD
H+-transporting two-sector ATPase (EC 3.6.3.14) delta
chain precursor, chloroplast - spinach
gi|21240|emb|CAA43634.1| ATP synthase [Spinacia
oleracea]
Length = 257
Score = 169 bits (427), Expect = 3e-41
Identities = 90/179 (50%), Positives = 129/179 (71%), Gaps = 2/179 (1%)
Frame = +3
Query: 57 TASIQAIPTTRNILTQKPI-LNLSLPSSTFTPLNLKLVSVAP-SRRSGGGALGARMNASA 230
T ++ A+ T+ T KP L+ S ++TF PL LK+++ + + + GGALG RM S
Sbjct: 15 TTAVAALSTSSTTSTPKPFSLSFSSSTATFNPLRLKILTASKLTAKPRGGALGTRMVDST 74
Query: 231 ATSYASALADVASSNKSLDATTADVEKLETLFSDAKVFDYFSNPTVRIEDKRKLIDDIAK 410
A+ YASALADVA +L+AT +DVEKL +FS+ V+ +F+NP + I++KR ++D+I
Sbjct: 75 ASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIIT 134
Query: 411 SSELQPHTRNFLYILIDSQRIDLIIEIVKEYELVYNTLTDTELAVVTSVVKLESQHLAQ 587
+S LQPHT NF+ ILIDS+RI+L+ EI+ E+E V+N +T TE+AVVTSVVKLE+ HLAQ
Sbjct: 135 TSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQ 193
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.317 0.126 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 610,007,330
Number of Sequences: 1393205
Number of extensions: 18713096
Number of successful extensions: 616161
Number of sequences better than 10.0: 17938
Number of HSP's better than 10.0 without gapping: 139044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332678
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
