Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015440A_C01 KMC015440A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191326.1| zinc finger - like protein; protein id: At3g576... 124 7e-28
gb|AAO64176.1| putative zinc finger protein [Arabidopsis thaliana] 124 7e-28
pir||A96550 hypothetical protein F11M15.9 [imported] - Arabidops... 94 1e-18
ref|NP_172787.1| zinc finger protein, putative; protein id: At1g... 94 1e-18
ref|NP_175533.1| hypothetical protein; protein id: At1g51220.1 [... 94 1e-18
>ref|NP_191326.1| zinc finger - like protein; protein id: At3g57670.1, supported by
cDNA: gi_18027011 [Arabidopsis thaliana]
gi|7488431|pir||T06753 zinc finger protein F15B8.140 -
Arabidopsis thaliana gi|4678280|emb|CAB41188.1| zinc
finger-like protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722.1|AF254447_1 WIP2 protein
[Arabidopsis thaliana]
Length = 383
Score = 124 bits (312), Expect = 7e-28
Identities = 56/60 (93%), Positives = 58/60 (96%), Gaps = 1/60 (1%)
Frame = -3
Query: 600 RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQ-DND 424
RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFG+GH AYGIDGF+EEDEPASEVEQ DND
Sbjct: 317 RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAYGIDGFDEEDEPASEVEQLDND 376
>gb|AAO64176.1| putative zinc finger protein [Arabidopsis thaliana]
Length = 383
Score = 124 bits (312), Expect = 7e-28
Identities = 56/60 (93%), Positives = 58/60 (96%), Gaps = 1/60 (1%)
Frame = -3
Query: 600 RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQ-DND 424
RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFG+GH AYGIDGF+EEDEPASEVEQ DND
Sbjct: 317 RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAYGIDGFDEEDEPASEVEQLDND 376
>pir||A96550 hypothetical protein F11M15.9 [imported] - Arabidopsis thaliana
gi|4836934|gb|AAD30636.1|AC006085_9 Hypothetical protein
[Arabidopsis thaliana]
Length = 299
Score = 94.4 bits (233), Expect = 1e-18
Identities = 42/60 (70%), Positives = 48/60 (80%), Gaps = 4/60 (6%)
Frame = -3
Query: 600 RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGF----EEEDEPASEVEQ 433
RTHEKNCGKLWYC CGSDFKHKRSLKDH+KAFG+GH GID F E+ + AS++EQ
Sbjct: 240 RTHEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVPCGIDSFGGDHEDYYDAASDIEQ 299
>ref|NP_172787.1| zinc finger protein, putative; protein id: At1g13290.1 [Arabidopsis
thaliana] gi|25372919|pir||E86267 hypothetical protein
T6J4.5 - Arabidopsis thaliana
gi|9958064|gb|AAG09553.1|AC011810_12 hypothetical
protein, similar to zinc finger proteins [Arabidopsis
thaliana] gi|18376496|emb|CAC86166.1| WIP6 protein
[Arabidopsis thaliana]
Length = 302
Score = 94.4 bits (233), Expect = 1e-18
Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 7/65 (10%)
Frame = -3
Query: 600 RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAY-------GIDGFEEEDEPASE 442
RTHEKNCGKLW+C+CGSDFKHKRSLKDH++AFG GHAA+ GI +E+DE E
Sbjct: 203 RTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGDGHAAHTVSDRVVGIGDADEDDEEEEE 262
Query: 441 VEQDN 427
E+D+
Sbjct: 263 EEEDD 267
>ref|NP_175533.1| hypothetical protein; protein id: At1g51220.1 [Arabidopsis
thaliana] gi|18376498|emb|CAC86167.1| WIP5 protein
[Arabidopsis thaliana]
Length = 337
Score = 94.4 bits (233), Expect = 1e-18
Identities = 42/60 (70%), Positives = 48/60 (80%), Gaps = 4/60 (6%)
Frame = -3
Query: 600 RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGF----EEEDEPASEVEQ 433
RTHEKNCGKLWYC CGSDFKHKRSLKDH+KAFG+GH GID F E+ + AS++EQ
Sbjct: 278 RTHEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVPCGIDSFGGDHEDYYDAASDIEQ 337
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,108,263
Number of Sequences: 1393205
Number of extensions: 10948542
Number of successful extensions: 26762
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 25168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26708
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
