Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015431A_C01 KMC015431A_c01
(466 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199051.1| putative protein; protein id: At5g42360.1, supp... 91 8e-18
gb|AAM63784.1| unknown [Arabidopsis thaliana] 90 1e-17
gb|AAL67108.1| AT5g42350/MDH9_4 [Arabidopsis thaliana] 90 1e-17
ref|NP_199050.1| putative protein; protein id: At5g42350.1, supp... 90 1e-17
ref|NP_297293.1| conserved hypothetical protein [Chlamydia murid... 32 3.3
>ref|NP_199051.1| putative protein; protein id: At5g42360.1, supported by cDNA:
271310., supported by cDNA: gi_14194152 [Arabidopsis
thaliana] gi|9759472|dbj|BAB10477.1|
gb|AAF07802.1~gene_id:MDH9.5~similar to unknown protein
[Arabidopsis thaliana]
gi|14194153|gb|AAK56271.1|AF367282_1 AT5g42360/MDH9_5
[Arabidopsis thaliana] gi|23506065|gb|AAN28892.1|
At5g42360/MDH9_5 [Arabidopsis thaliana]
Length = 563
Score = 90.5 bits (223), Expect = 8e-18
Identities = 41/69 (59%), Positives = 56/69 (80%), Gaps = 1/69 (1%)
Frame = -2
Query: 447 MDWNAVFVSDKNLIFGVEMFKIFGQVLDFFTVCDV-SNIANWKHISRNHVTHELDGSSCL 271
MDWNA +VSD+N++ GVEMFKIFGQVL FFTVCD+ + A+W+H+SRN +L+ SC+
Sbjct: 496 MDWNATYVSDQNILMGVEMFKIFGQVLSFFTVCDILTEEASWRHVSRNQRNQKLN-LSCM 554
Query: 270 TKSVAVLHL 244
K++A+LHL
Sbjct: 555 NKTIALLHL 563
>gb|AAM63784.1| unknown [Arabidopsis thaliana]
Length = 562
Score = 89.7 bits (221), Expect = 1e-17
Identities = 41/69 (59%), Positives = 56/69 (80%), Gaps = 1/69 (1%)
Frame = -2
Query: 447 MDWNAVFVSDKNLIFGVEMFKIFGQVLDFFTVCDV-SNIANWKHISRNHVTHELDGSSCL 271
MDWNA +VSD+N++ G+EMFKIFGQVL FFTVCDV + A+W+H+SRN + +L+ SC
Sbjct: 495 MDWNATYVSDQNILMGIEMFKIFGQVLSFFTVCDVLTEEASWRHVSRNQRSQKLN-LSCT 553
Query: 270 TKSVAVLHL 244
K++A+LHL
Sbjct: 554 NKTIALLHL 562
>gb|AAL67108.1| AT5g42350/MDH9_4 [Arabidopsis thaliana]
Length = 563
Score = 89.7 bits (221), Expect = 1e-17
Identities = 41/69 (59%), Positives = 56/69 (80%), Gaps = 1/69 (1%)
Frame = -2
Query: 447 MDWNAVFVSDKNLIFGVEMFKIFGQVLDFFTVCDV-SNIANWKHISRNHVTHELDGSSCL 271
MDWNA +VSD+N++ G+EMFKIFGQVL FFTVCDV + A+W+H+SRN + +L+ SC
Sbjct: 496 MDWNATYVSDQNILMGIEMFKIFGQVLSFFTVCDVLTEEASWRHVSRNQRSQKLN-LSCT 554
Query: 270 TKSVAVLHL 244
K++A+LHL
Sbjct: 555 NKTIALLHL 563
>ref|NP_199050.1| putative protein; protein id: At5g42350.1, supported by cDNA:
gi_16930696, supported by cDNA: gi_18377842 [Arabidopsis
thaliana] gi|9759471|dbj|BAB10476.1|
gb|AAF07802.1~gene_id:MDH9.4~similar to unknown protein
[Arabidopsis thaliana]
gi|16930697|gb|AAL32014.1|AF436832_1 AT5g42350/MDH9_4
[Arabidopsis thaliana]
Length = 563
Score = 89.7 bits (221), Expect = 1e-17
Identities = 41/69 (59%), Positives = 56/69 (80%), Gaps = 1/69 (1%)
Frame = -2
Query: 447 MDWNAVFVSDKNLIFGVEMFKIFGQVLDFFTVCDV-SNIANWKHISRNHVTHELDGSSCL 271
MDWNA +VSD+N++ G+EMFKIFGQVL FFTVCDV + A+W+H+SRN + +L+ SC
Sbjct: 496 MDWNATYVSDQNILMGIEMFKIFGQVLSFFTVCDVLTEEASWRHVSRNQRSQKLN-LSCT 554
Query: 270 TKSVAVLHL 244
K++A+LHL
Sbjct: 555 NKTIALLHL 563
>ref|NP_297293.1| conserved hypothetical protein [Chlamydia muridarum]
gi|14195531|sp|Q9PJB1|Y921_CHLMU Hypothetical protein
TC0921 gi|11282067|pir||H81650 conserved hypothetical
protein TC0921 [imported] - Chlamydia muridarum (strain
Nigg) gi|7190948|gb|AAF39712.1| conserved hypothetical
protein [Chlamydia muridarum]
Length = 529
Score = 32.0 bits (71), Expect = 3.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 292 LMSNMIP*NMLPICNIRHITYSEKIQHLTKYFEHLYPKN 408
LM++ L C+ TYSE I + YFE +YPK+
Sbjct: 155 LMTSAFKDTFLDTCDFLFNTYSELIPQVRAYFEKIYPKD 193
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,991,928
Number of Sequences: 1393205
Number of extensions: 8182228
Number of successful extensions: 24158
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 23605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24146
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
