Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015425A_C01 KMC015425A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O23755|EF2_BETVU Elongation factor 2 (EF-2) gi|7443464|pir||T... 369 e-102
pir||A96602 elongation factor EF-2 [imported] - Arabidopsis thal... 366 e-101
ref|NP_564707.2| elongation factor, putative; protein id: At1g56... 366 e-101
gb|AAN31925.1| putative elongation factor [Arabidopsis thaliana] 366 e-101
gb|AAK59516.1| putative elongation factor [Arabidopsis thaliana]... 366 e-101
>sp|O23755|EF2_BETVU Elongation factor 2 (EF-2) gi|7443464|pir||T14579 translation
elongation factor eEF-2 - beet gi|2369714|emb|CAB09900.1|
elongation factor 2 [Beta vulgaris]
Length = 843
Score = 369 bits (946), Expect(2) = e-102
Identities = 179/193 (92%), Positives = 190/193 (97%)
Frame = -1
Query: 610 VALVGLDQFITKNATLTNEKETDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 431
VALVGLDQ+ITKNATLTNEKE+DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL
Sbjct: 452 VALVGLDQYITKNATLTNEKESDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 511
Query: 430 AKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIVKSDPVVSFRETVLER 251
AKSDPMVVC+IEESGEHI+AGAGELHLEICLKDLQDDFMGGAEI+KSDPVVSFRETVL+R
Sbjct: 512 AKSDPMVVCSIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLDR 571
Query: 250 SCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGKIGPRDDPKVRSKILSEEYGWDKDLA 71
S RTVMSKSPNKHNRLYMEARP+E+GLAEAID+G+IGPRDDPK RSKIL+EEYGWDKDLA
Sbjct: 572 SVRTVMSKSPNKHNRLYMEARPMEEGLAEAIDEGRIGPRDDPKNRSKILAEEYGWDKDLA 631
Query: 70 KKIWCFGPETLGP 32
KKIWCFGPET GP
Sbjct: 632 KKIWCFGPETTGP 644
Score = 25.4 bits (54), Expect(2) = e-102
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3
Query: 32 NMVVDMCKGV 3
NMVVDMCKGV
Sbjct: 645 NMVVDMCKGV 654
>pir||A96602 elongation factor EF-2 [imported] - Arabidopsis thaliana
gi|6056373|gb|AAF02837.1|AC009894_8 elongation factor
EF-2 [Arabidopsis thaliana]
Length = 846
Score = 366 bits (940), Expect(2) = e-101
Identities = 178/193 (92%), Positives = 188/193 (97%)
Frame = -1
Query: 610 VALVGLDQFITKNATLTNEKETDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 431
VA+VGLDQFITKNATLTNEKE DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL
Sbjct: 455 VAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 514
Query: 430 AKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIVKSDPVVSFRETVLER 251
AKSDPMVVCT+EESGEHIVAGAGELHLEICLKDLQDDFMGGAEI+KSDPVVSFRETV +R
Sbjct: 515 AKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVCDR 574
Query: 250 SCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGKIGPRDDPKVRSKILSEEYGWDKDLA 71
S RTVMSKSPNKHNRLYMEARP+E+GLAEAIDDG+IGPRDDPK+RSKIL+EE+GWDKDLA
Sbjct: 575 STRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLA 634
Query: 70 KKIWCFGPETLGP 32
KKIW FGPET GP
Sbjct: 635 KKIWAFGPETTGP 647
Score = 25.4 bits (54), Expect(2) = e-101
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3
Query: 32 NMVVDMCKGV 3
NMVVDMCKGV
Sbjct: 648 NMVVDMCKGV 657
>ref|NP_564707.2| elongation factor, putative; protein id: At1g56075.1, supported by
cDNA: gi_13605864, supported by cDNA: gi_15450762
[Arabidopsis thaliana]
gi|13605865|gb|AAK32918.1|AF367331_1 At1g56070/T6H22_13
[Arabidopsis thaliana] gi|15450763|gb|AAK96653.1|
elongation factor EF-2 [Arabidopsis thaliana]
gi|23397045|gb|AAN31808.1| putative elongation factor
[Arabidopsis thaliana] gi|23397162|gb|AAN31864.1|
putative elongation factor [Arabidopsis thaliana]
gi|27363422|gb|AAO11630.1| At1g56070/T6H22_13
[Arabidopsis thaliana]
Length = 843
Score = 366 bits (940), Expect(2) = e-101
Identities = 178/193 (92%), Positives = 188/193 (97%)
Frame = -1
Query: 610 VALVGLDQFITKNATLTNEKETDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 431
VA+VGLDQFITKNATLTNEKE DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL
Sbjct: 452 VAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 511
Query: 430 AKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIVKSDPVVSFRETVLER 251
AKSDPMVVCT+EESGEHIVAGAGELHLEICLKDLQDDFMGGAEI+KSDPVVSFRETV +R
Sbjct: 512 AKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVCDR 571
Query: 250 SCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGKIGPRDDPKVRSKILSEEYGWDKDLA 71
S RTVMSKSPNKHNRLYMEARP+E+GLAEAIDDG+IGPRDDPK+RSKIL+EE+GWDKDLA
Sbjct: 572 STRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLA 631
Query: 70 KKIWCFGPETLGP 32
KKIW FGPET GP
Sbjct: 632 KKIWAFGPETTGP 644
Score = 25.4 bits (54), Expect(2) = e-101
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3
Query: 32 NMVVDMCKGV 3
NMVVDMCKGV
Sbjct: 645 NMVVDMCKGV 654
>gb|AAN31925.1| putative elongation factor [Arabidopsis thaliana]
Length = 665
Score = 366 bits (940), Expect(2) = e-101
Identities = 178/193 (92%), Positives = 188/193 (97%)
Frame = -1
Query: 610 VALVGLDQFITKNATLTNEKETDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 431
VA+VGLDQFITKNATLTNEKE DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL
Sbjct: 274 VAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 333
Query: 430 AKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIVKSDPVVSFRETVLER 251
AKSDPMVVCT+EESGEHIVAGAGELHLEICLKDLQDDFMGGAEI+KSDPVVSFRETV +R
Sbjct: 334 AKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVCDR 393
Query: 250 SCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGKIGPRDDPKVRSKILSEEYGWDKDLA 71
S RTVMSKSPNKHNRLYMEARP+E+GLAEAIDDG+IGPRDDPK+RSKIL+EE+GWDKDLA
Sbjct: 394 STRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLA 453
Query: 70 KKIWCFGPETLGP 32
KKIW FGPET GP
Sbjct: 454 KKIWAFGPETTGP 466
Score = 25.4 bits (54), Expect(2) = e-101
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3
Query: 32 NMVVDMCKGV 3
NMVVDMCKGV
Sbjct: 467 NMVVDMCKGV 476
>gb|AAK59516.1| putative elongation factor [Arabidopsis thaliana]
gi|17104671|gb|AAL34224.1| putative elongation factor
[Arabidopsis thaliana]
Length = 655
Score = 366 bits (940), Expect(2) = e-101
Identities = 178/193 (92%), Positives = 188/193 (97%)
Frame = -1
Query: 610 VALVGLDQFITKNATLTNEKETDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 431
VA+VGLDQFITKNATLTNEKE DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL
Sbjct: 264 VAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 323
Query: 430 AKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIVKSDPVVSFRETVLER 251
AKSDPMVVCT+EESGEHIVAGAGELHLEICLKDLQDDFMGGAEI+KSDPVVSFRETV +R
Sbjct: 324 AKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVCDR 383
Query: 250 SCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGKIGPRDDPKVRSKILSEEYGWDKDLA 71
S RTVMSKSPNKHNRLYMEARP+E+GLAEAIDDG+IGPRDDPK+RSKIL+EE+GWDKDLA
Sbjct: 384 STRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLA 443
Query: 70 KKIWCFGPETLGP 32
KKIW FGPET GP
Sbjct: 444 KKIWAFGPETTGP 456
Score = 25.4 bits (54), Expect(2) = e-101
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3
Query: 32 NMVVDMCKGV 3
NMVVDMCKGV
Sbjct: 457 NMVVDMCKGV 466
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,204,288
Number of Sequences: 1393205
Number of extensions: 11928944
Number of successful extensions: 55346
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 51653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54453
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
