Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015419A_C01 KMC015419A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_648313.1| CG3891-PA [Drosophila melanogaster] gi|7294940|... 36 0.35
pir||C39725 hypothetical protein (MS11 5' region) - fruit fly (... 34 1.0
gb|EAA34202.1| predicted protein [Neurospora crassa] 33 2.3
ref|NP_652748.1| NADH dehydrogenase subunit 2 [Tigriopus japonic... 33 3.0
ref|NP_564169.1| glycine-rich RNA-binding protein, putative; pro... 32 3.9
>ref|NP_648313.1| CG3891-PA [Drosophila melanogaster] gi|7294940|gb|AAF50269.1|
CG3891-PA [Drosophila melanogaster]
gi|21430190|gb|AAM50773.1| LD21748p [Drosophila
melanogaster]
Length = 399
Score = 35.8 bits (81), Expect = 0.35
Identities = 21/54 (38%), Positives = 28/54 (50%)
Frame = +1
Query: 37 EHQQLYHQQQNNQQQYMFGGGNREAAVAENTFFQRLSNPITTTNTITNLNVNDE 198
+HQQ+ Q QN QQQ AAVA + +S ++T+ T TN N DE
Sbjct: 230 QHQQVQSQTQNQQQQQQ---QQTVAAVAASAAVNNISADVSTSTTGTNTNSEDE 280
>pir||C39725 hypothetical protein (MS11 5' region) - fruit fly (Drosophila
melanogaster)
Length = 355
Score = 34.3 bits (77), Expect = 1.0
Identities = 25/59 (42%), Positives = 31/59 (52%)
Frame = +1
Query: 16 NTNGLVLEHQQLYHQQQNNQQQYMFGGGNREAAVAENTFFQRLSNPITTTNTITNLNVN 192
N N ++L HQQ YHQQQ QQ+ GN A N +N I T+NT N+N N
Sbjct: 33 NDNNMLLYHQQ-YHQQQTQQQRL----GN---VAAHNISPNGSNNNINTSNT-NNINFN 82
>gb|EAA34202.1| predicted protein [Neurospora crassa]
Length = 810
Score = 33.1 bits (74), Expect = 2.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 37 EHQQLYHQQQNNQQQYMFGGGNREAAVAENTFFQRLSNPITTT 165
+HQQ + QQQ Q +GGG R ++ A + R P TT+
Sbjct: 655 QHQQHHQQQQQQQHLPPYGGGGRPSSRAASAVPSRNGTPTTTS 697
>ref|NP_652748.1| NADH dehydrogenase subunit 2 [Tigriopus japonicus]
gi|21320910|dbj|BAB97219.1| NADH dehydrogenase subunit 1
[Tigriopus japonicus]
Length = 306
Score = 32.7 bits (73), Expect = 3.0
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = -1
Query: 215 SMKSWSSSLTFRFVIVFVVVIGLLNLWKNVFSATAASLLPPPNM--YCCWLFCCW*YSCW 42
S++ + S+++ + + ++V+ ++ LW++ +AA LP P + + L W SC
Sbjct: 134 SLRGIAQSISYE-ISLSLIVLSMMLLWQSFSIESAADFLPSPGLTVFLFPLLSLWLISCL 192
Query: 41 C-SNTRPFVFTE 9
SN PF F E
Sbjct: 193 AESNRTPFDFAE 204
>ref|NP_564169.1| glycine-rich RNA-binding protein, putative; protein id: At1g22335.1
[Arabidopsis thaliana]
Length = 139
Score = 32.3 bits (72), Expect = 3.9
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Frame = +1
Query: 34 LEHQQLY----HQQQNNQQQYMFGGGNREAAVAENTFFQRLSNPITTTNTITNLNVNDED 201
L HQQ Y HQQQ QQQ + N SN T+ +++ +
Sbjct: 50 LHHQQHYQYHHHQQQQQQQQQRLPSASSYLIYPSNVEAPTPSNVPTSQGPLSSSTESHAP 109
Query: 202 QLFMDHGGRFFPT 240
Q + GG F PT
Sbjct: 110 QQVSEEGGEFDPT 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,942,845
Number of Sequences: 1393205
Number of extensions: 10168624
Number of successful extensions: 35715
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 29528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34781
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
