Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015397A_C01 KMC015397A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_228550.1| similar to GABA-A epsilon subunit splice varian... 65 6e-10
ref|XP_140749.1| similar to circumsporozoite protein [Plasmodium... 65 6e-10
gb|AAC05661.1| putative pupal-specific cuticular protein CP2c [A... 59 4e-08
gb|ZP_00015410.1| hypothetical protein [Rhodospirillum rubrum] 56 3e-07
ref|NP_774135.1| bll7495 [Bradyrhizobium japonicum] gi|27355778|... 55 8e-07
>ref|XP_228550.1| similar to GABA-A epsilon subunit splice variant [Rattus
norvegicus]
Length = 598
Score = 65.1 bits (157), Expect = 6e-10
Identities = 35/88 (39%), Positives = 57/88 (64%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
S + + SEP+G+ SEP+G+ SEP+G+ SEP+G +S+ A G+ SEP+G+ SE
Sbjct: 189 SEPKGEPESEPKGEPASEPKGEPESEPKGEPESEPKGEPESQ--AMGEPESEPKGEPESE 246
Query: 313 PRDSSQSRSATRSDRFSEPRGDRFSEPR 230
P+ +S++ + SEP+G+ SEP+
Sbjct: 247 PKGEPESQAMGEPE--SEPKGEPESEPK 272
Score = 60.5 bits (145), Expect = 1e-08
Identities = 32/93 (34%), Positives = 57/93 (60%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
S + + SEP+G+ SEP+G+ SEP+G+ SEP+G +S +G+ SEP+G+ SE
Sbjct: 261 SEPKGEPESEPKGEPASEPKGEPASEPKGEPASEPKGEPESE--PKGEPESEPKGEPESE 318
Query: 313 PRDSSQSRSATRSDRFSEPRGDRFSEPRDSTQN 215
P+ +S++ + SEP+G+ S+ +++
Sbjct: 319 PKGEPESQAMGEPE--SEPKGEPESQAMGESES 349
Score = 59.3 bits (142), Expect = 3e-08
Identities = 33/93 (35%), Positives = 56/93 (59%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
S + + SEP+G+ S+ G+ SEP+G+ SEP+G +S+ A G+ SEP+G+ SE
Sbjct: 213 SEPKGEPESEPKGEPESQAMGEPESEPKGEPESEPKGEPESQ--AMGEPESEPKGEPESE 270
Query: 313 PRDSSQSRSATRSDRFSEPRGDRFSEPRDSTQN 215
P+ + S + + SEP+G+ SEP+ ++
Sbjct: 271 PK--GEPASEPKGEPASEPKGEPASEPKGEPES 301
Score = 56.6 bits (135), Expect = 2e-07
Identities = 32/93 (34%), Positives = 55/93 (58%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
S + + SEP+G+ SEP+G+ SEP+G+ SEP+G +S+ A G+ SEP+G+ E
Sbjct: 285 SEPKGEPASEPKGEPESEPKGEPESEPKGEPESEPKGEPESQ--AMGEPESEPKGE--PE 340
Query: 313 PRDSSQSRSATRSDRFSEPRGDRFSEPRDSTQN 215
+ +S S + + S+ G+ SEP+ ++
Sbjct: 341 SQAMGESESEPKGEPESQAMGEPESEPKGEPES 373
Score = 56.2 bits (134), Expect = 3e-07
Identities = 31/86 (36%), Positives = 53/86 (61%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
S + + SEP+G+ SEP+G+ SEP+G+ SEP+G +S +G+ S+ G+ SE
Sbjct: 277 SEPKGEPASEPKGEPASEPKGEPESEPKGEPESEPKGEPESEP--KGEPESQAMGEPESE 334
Query: 313 PRDSSQSRSATRSDRFSEPRGDRFSE 236
P+ +S++ S+ SEP+G+ S+
Sbjct: 335 PKGEPESQAMGESE--SEPKGEPESQ 358
Score = 56.2 bits (134), Expect = 3e-07
Identities = 30/84 (35%), Positives = 50/84 (58%)
Frame = -3
Query: 466 EPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSEPRDSSQSRS 287
EP+G+ SEP+G+ SEP+G+ SEP+G +S EP+G+ SEP+ +S++
Sbjct: 182 EPKGEPESEPKGEPESEPKGEPASEPKGEPES----------EPKGEPESEPKGEPESQA 231
Query: 286 ATRSDRFSEPRGDRFSEPRDSTQN 215
+ SEP+G+ SEP+ ++
Sbjct: 232 MGEPE--SEPKGEPESEPKGEPES 253
Score = 52.8 bits (125), Expect = 3e-06
Identities = 29/93 (31%), Positives = 54/93 (57%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
S + + SE +G+ S+P+G+ S+P+G+ EP +Q + +G+ SEP+G+ SE
Sbjct: 141 SQPKGEPKSEVKGEPKSQPKGEPESQPKGEPKGEP--ESQPKGEPKGEPESEPKGEPESE 198
Query: 313 PRDSSQSRSATRSDRFSEPRGDRFSEPRDSTQN 215
P+ + S + + SEP+G+ SEP+ ++
Sbjct: 199 PK--GEPASEPKGEPESEPKGEPESEPKGEPES 229
Score = 52.8 bits (125), Expect = 3e-06
Identities = 28/97 (28%), Positives = 54/97 (54%), Gaps = 4/97 (4%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRG--STQSRSAARGDRFSEPRGDRF 320
S + + S+P+G S+P+G+ SE +G+ S+P+G +Q + +G+ S+P+G+
Sbjct: 125 SEVKGEPKSQPKGKPKSQPKGEPKSEVKGEPKSQPKGEPESQPKGEPKGEPESQPKGEPK 184
Query: 319 SEPRD--SSQSRSATRSDRFSEPRGDRFSEPRDSTQN 215
EP + S + + SEP+G+ SEP+ ++
Sbjct: 185 GEPESEPKGEPESEPKGEPASEPKGEPESEPKGEPES 221
Score = 52.4 bits (124), Expect = 4e-06
Identities = 28/85 (32%), Positives = 51/85 (59%), Gaps = 6/85 (7%)
Frame = -3
Query: 466 EPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSEPR------D 305
EP+G+ SE +G+ S+P+G S+P+G + +S +G+ S+P+G+ S+P+
Sbjct: 118 EPKGEPESEVKGEPKSQPKGKPKSQPKG--EPKSEVKGEPKSQPKGEPESQPKGEPKGEP 175
Query: 304 SSQSRSATRSDRFSEPRGDRFSEPR 230
SQ + + + SEP+G+ SEP+
Sbjct: 176 ESQPKGEPKGEPESEPKGEPESEPK 200
Score = 49.3 bits (116), Expect = 3e-05
Identities = 29/93 (31%), Positives = 52/93 (55%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
S + + SEP+G+ SEP+G+ S+ G+ SEP+G +S+ A G+ SEP+G+ E
Sbjct: 301 SEPKGEPESEPKGEPESEPKGEPESQAMGEPESEPKGEPESQ--AMGESESEPKGE--PE 356
Query: 313 PRDSSQSRSATRSDRFSEPRGDRFSEPRDSTQN 215
+ + S + + S+ G+ SEP+ ++
Sbjct: 357 SQAMGEPESEPKGEPESQAMGEPESEPKGEPES 389
Score = 48.5 bits (114), Expect = 6e-05
Identities = 28/86 (32%), Positives = 50/86 (57%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
S + + SEP+G+ SEP+G+ SEP+G+ S+ G +S +G+ S+ G+ SE
Sbjct: 293 SEPKGEPESEPKGEPESEPKGEPESEPKGEPESQAMGEPESE--PKGEPESQAMGESESE 350
Query: 313 PRDSSQSRSATRSDRFSEPRGDRFSE 236
P+ +S++ + SEP+G+ S+
Sbjct: 351 PKGEPESQAMGEPE--SEPKGEPESQ 374
Score = 46.6 bits (109), Expect = 2e-04
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
S + + S+ G+ SEP+G+ S+ G+ SEP+G +S+ A G+ SEP+G+ S+
Sbjct: 333 SEPKGEPESQAMGESESEPKGEPESQAMGEPESEPKGEPESQ--AMGEPESEPKGEPESQ 390
Query: 313 PRDSSQSR------SATRSDRFSEPRGDRFSEP 233
+S+ S + SEP+G+ SEP
Sbjct: 391 AMGEPESQVMGEPESQVMGEPESEPKGEPESEP 423
Score = 43.5 bits (101), Expect = 0.002
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
S + + S+ G+ SEP+G+ S+ G+ SEP+G +S+ A G+ SEP+G+ S+
Sbjct: 317 SEPKGEPESQAMGEPESEPKGEPESQAMGESESEPKGEPESQ--AMGEPESEPKGEPESQ 374
Query: 313 P--RDSSQSRSATRSDRFSEPRGDRFSEP 233
S+ + S EP EP
Sbjct: 375 AMGEPESEPKGEPESQAMGEPESQVMGEP 403
Score = 42.0 bits (97), Expect = 0.006
Identities = 25/87 (28%), Positives = 37/87 (41%), Gaps = 2/87 (2%)
Frame = -3
Query: 469 SEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAA--RGDRFSEPRGDRFSEPRDSSQ 296
SEP+G+ SEP G+ SEP + S+ G +S++ EP EP SQ
Sbjct: 413 SEPKGEPESEPMGEPESEPMEEPESQAMGEPESQAMGEPESQAMGEPESQAMGEP--ESQ 470
Query: 295 SRSATRSDRFSEPRGDRFSEPRDSTQN 215
+ S EP EP+ + +
Sbjct: 471 AMGEPESQAMGEPESQAMGEPKGESDS 497
Score = 40.4 bits (93), Expect = 0.016
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -3
Query: 469 SEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAA--RGDRFSEPRGDRFSEPRDSSQ 296
S+ G+ SEP+G+ SEP G+ SEP +S++ EP EP SQ
Sbjct: 405 SQVMGEPESEPKGEPESEPMGEPESEPMEEPESQAMGEPESQAMGEPESQAMGEP--ESQ 462
Query: 295 SRSATRSDRFSEPRGDRFSEP 233
+ S EP EP
Sbjct: 463 AMGEPESQAMGEPESQAMGEP 483
Score = 37.7 bits (86), Expect = 0.10
Identities = 24/81 (29%), Positives = 32/81 (38%), Gaps = 2/81 (2%)
Frame = -3
Query: 469 SEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSR--SAARGDRFSEPRGDRFSEPRDSSQ 296
S+ G+ S+ G+ SEP+G+ SEP G +S EP EP SQ
Sbjct: 397 SQVMGEPESQVMGEPESEPKGEPESEPMGEPESEPMEEPESQAMGEPESQAMGEP--ESQ 454
Query: 295 SRSATRSDRFSEPRGDRFSEP 233
+ S EP EP
Sbjct: 455 AMGEPESQAMGEPESQAMGEP 475
Score = 37.7 bits (86), Expect = 0.10
Identities = 25/90 (27%), Positives = 39/90 (42%), Gaps = 2/90 (2%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAA--RGDRFSEPRGDRF 320
S + + SEP G+ SEP + S+ G+ S+ G +S++ EP
Sbjct: 413 SEPKGEPESEPMGEPESEPMEEPESQAMGEPESQAMGEPESQAMGEPESQAMGEPESQAM 472
Query: 319 SEPRDSSQSRSATRSDRFSEPRGDRFSEPR 230
EP SQ+ S EP+G+ SE +
Sbjct: 473 GEP--ESQAMGEPESQAMGEPKGESDSEAK 500
Score = 33.9 bits (76), Expect = 1.5
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Frame = -3
Query: 466 EPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSEPRDS---SQ 296
EP EP EP EP+G +S S A+G+ E + + R + +Q
Sbjct: 466 EPESQAMGEPESQAMGEPESQAMGEPKG--ESDSEAKGEPEQEITAEEAKKKRAAYLLAQ 523
Query: 295 SRSATRSDRF-----SEPRGDR 245
R R +RF S+PR R
Sbjct: 524 QRKRKRKNRFICMSSSKPRRKR 545
>ref|XP_140749.1| similar to circumsporozoite protein [Plasmodium vinckei lentum]
[Mus musculus]
Length = 260
Score = 65.1 bits (157), Expect = 6e-10
Identities = 40/96 (41%), Positives = 52/96 (53%), Gaps = 1/96 (1%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
S ++ D S P+GD S P+GD S P+GD S P+G S S +GD S P+GD S
Sbjct: 169 SPSQGDSVSPPQGDSVSPPQGDSVSPPQGDSVSPPQG--DSVSPPQGDSVSPPQGDSVSP 226
Query: 313 PRDSSQSRSATRSDRFSEPRGDRFSEPR-DSTQNPQ 209
P+ S S + D S P+GD S P+ DS PQ
Sbjct: 227 PQ--GDSVSPPQGDSVSPPQGDSVSPPQGDSVSPPQ 260
Score = 61.2 bits (147), Expect = 9e-09
Identities = 39/96 (40%), Positives = 50/96 (51%), Gaps = 1/96 (1%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
S + D S +GD S P+GD S P+GD S P+G S S +GD S P+GD S
Sbjct: 161 SPPQGDSVSPSQGDSVSPPQGDSVSPPQGDSVSPPQG--DSVSPPQGDSVSPPQGDSVSP 218
Query: 313 PRDSSQSRSATRSDRFSEPRGDRFSEPR-DSTQNPQ 209
P+ S S + D S P+GD S P+ DS PQ
Sbjct: 219 PQ--GDSVSPPQGDSVSPPQGDSVSPPQGDSVSPPQ 252
Score = 60.5 bits (145), Expect = 1e-08
Identities = 38/94 (40%), Positives = 49/94 (51%), Gaps = 1/94 (1%)
Frame = -3
Query: 487 TRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSEPR 308
+ D S P+GD S +GD S P+GD S P+G S S +GD S P+GD S P+
Sbjct: 155 SEGDSVSPPQGDSVSPSQGDSVSPPQGDSVSPPQG--DSVSPPQGDSVSPPQGDSVSPPQ 212
Query: 307 DSSQSRSATRSDRFSEPRGDRFSEPR-DSTQNPQ 209
S S + D S P+GD S P+ DS PQ
Sbjct: 213 --GDSVSPPQGDSVSPPQGDSVSPPQGDSVSPPQ 244
Score = 54.7 bits (130), Expect = 8e-07
Identities = 36/93 (38%), Positives = 46/93 (48%), Gaps = 1/93 (1%)
Frame = -3
Query: 484 RNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSEPRD 305
+ D GD S P+GD S +GD S P+G S S +GD S P+GD S P+
Sbjct: 148 QRDEKLRSEGDSVSPPQGDSVSPSQGDSVSPPQG--DSVSPPQGDSVSPPQGDSVSPPQ- 204
Query: 304 SSQSRSATRSDRFSEPRGDRFSEPR-DSTQNPQ 209
S S + D S P+GD S P+ DS PQ
Sbjct: 205 -GDSVSPPQGDSVSPPQGDSVSPPQGDSVSPPQ 236
Score = 42.4 bits (98), Expect = 0.004
Identities = 36/106 (33%), Positives = 49/106 (45%), Gaps = 3/106 (2%)
Frame = -3
Query: 517 GGRNDATGSATRNDRFSEPRGDRFSEPRGDRFSEPR--GDRFSEPRGSTQSRSAARGDRF 344
G + D + + F P +E G R + R GD S P+G + S S +GD
Sbjct: 124 GSKGDLFPACHLDGTFQSP-----TEIPGQRDEKLRSEGDSVSPPQGDSVSPS--QGDSV 176
Query: 343 SEPRGDRFSEPRDSSQSRSATRSDRFSEPRGDRFSEPR-DSTQNPQ 209
S P+GD S P+ S S + D S P+GD S P+ DS PQ
Sbjct: 177 SPPQGDSVSPPQ--GDSVSPPQGDSVSPPQGDSVSPPQGDSVSPPQ 220
>gb|AAC05661.1| putative pupal-specific cuticular protein CP2c [Anopheles gambiae]
Length = 263
Score = 58.9 bits (141), Expect = 4e-08
Identities = 34/77 (44%), Positives = 35/77 (45%)
Frame = +1
Query: 244 IYHHEAPRIYHF*LQIDFDLNHEAPRIYRHEALRIYHL*LQTDFESTHEALRIYHHEAPR 423
I HH AP I H H AP IY+H A IY H A IY H AP
Sbjct: 35 IQHHAAPAIQHV------GSVHAAPAIYQHSAPAIYQ----------HSAPAIYQHSAPA 78
Query: 424 IYHHEAPRIYHHEAPRI 474
IY H AP IY H AP I
Sbjct: 79 IYQHSAPAIYQHSAPAI 95
Score = 49.7 bits (117), Expect = 3e-05
Identities = 27/63 (42%), Positives = 29/63 (45%)
Frame = +1
Query: 322 IYRHEALRIYHL*LQTDFESTHEALRIYHHEAPRIYHHEAPRIYHHEAPRIYHF*LQILL 501
I H A I H+ S H A IY H AP IY H AP IY H AP IY +
Sbjct: 35 IQHHAAPAIQHV------GSVHAAPAIYQHSAPAIYQHSAPAIYQHSAPAIYQHSAPAIY 88
Query: 502 HHS 510
HS
Sbjct: 89 QHS 91
Score = 34.3 bits (77), Expect = 1.2
Identities = 24/65 (36%), Positives = 28/65 (42%), Gaps = 1/65 (1%)
Frame = +1
Query: 139 QHMG-VNTTPVNYQASPDSTYLQVFGDFELNHEAPRIYHHEAPRIYHF*LQIDFDLNHEA 315
QH+G V+ P YQ S + Y Q H AP IY H AP IY H A
Sbjct: 44 QHVGSVHAAPAIYQHSAPAIY-QHSAPAIYQHSAPAIYQHSAPAIY----------QHSA 92
Query: 316 PRIYR 330
P I +
Sbjct: 93 PAIVK 97
>gb|ZP_00015410.1| hypothetical protein [Rhodospirillum rubrum]
Length = 677
Score = 56.2 bits (134), Expect = 3e-07
Identities = 39/108 (36%), Positives = 50/108 (46%)
Frame = -3
Query: 493 SATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSRSAARGDRFSEPRGDRFSE 314
+A R S PR R SEPR + EPR R +EPR +RSA DR +E R R +E
Sbjct: 572 AAAAAPRASAPRAPRASEPRVTKPYEPRAPRSTEPRAPRAARSA---DRPTEARAPRTAE 628
Query: 313 PRDSSQSRSATRSDRFSEPRGDRFSEPRDSTQNPQRPANRWSRVRPGS 170
P R SDR SEPR + + + W + +PGS
Sbjct: 629 P------RPPRASDRASEPRAAKAPRRTEKPAVGKAMVKTWGKPKPGS 670
>ref|NP_774135.1| bll7495 [Bradyrhizobium japonicum] gi|27355778|dbj|BAC52760.1|
bll7495 [Bradyrhizobium japonicum USDA 110]
Length = 696
Score = 54.7 bits (130), Expect = 8e-07
Identities = 46/128 (35%), Positives = 56/128 (42%), Gaps = 9/128 (7%)
Frame = -3
Query: 556 KHNRHTKRHNDGRGGRNDATGSAT--RNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRG 383
+ R +R +G R D + R+DR E RG+R +PRGDR RG R E R
Sbjct: 56 REGRPFRRREEGDAPRRDFSDRPRFKRDDRGGEERGERSFKPRGDRPFSDRGARDGEKR- 114
Query: 382 STQSRSAARGDRFSEPRGDRFSEPRDSSQSRSATRS-------DRFSEPRGDRFSEPRDS 224
RGDR S R DR RD SR+A R+ R S PRGDR D
Sbjct: 115 ----PFKPRGDRPSYGRDDRPPRSRDRDDSRAAGRTGDRKFGDKRPSAPRGDRPERKFDG 170
Query: 223 TQNPQRPA 200
+ R A
Sbjct: 171 ERKFSRGA 178
Score = 40.0 bits (92), Expect = 0.021
Identities = 43/140 (30%), Positives = 62/140 (43%), Gaps = 15/140 (10%)
Frame = -3
Query: 577 EKKSSEQKHNRHTKRHNDGRGGRNDATGSATRNDRFSEPRGDRF-SEPRGDRFSEPRGDR 401
+K+ S + +R ++ + G R + G+ R+DR RG+R S+P R + PRGDR
Sbjct: 153 DKRPSAPRGDRPERKFD---GERKFSRGAPDRSDR-PRDRGERSDSKPWQKRDAGPRGDR 208
Query: 400 -----FSE-PRGSTQSRSAARGDRFSEPRG----DRFSEPRDS--SQSRSATRSDRFSEP 257
FS+ PR R + + + G RFS RD S R +F P
Sbjct: 209 PPRKDFSKGPRKDFGGRDRSEDKPWQKREGGDDRPRFSRSRDDRPSGDRPFRERPKFDRP 268
Query: 256 RGDR--FSEPRDSTQNPQRP 203
+ DR F PRD RP
Sbjct: 269 KFDRPKFDRPRDDRPKFDRP 288
Score = 38.1 bits (87), Expect = 0.080
Identities = 38/114 (33%), Positives = 48/114 (41%), Gaps = 10/114 (8%)
Frame = -3
Query: 517 GGRNDATGSATRNDRFSEPRGDR-------FSEPRGDR--FSEPRGDRFSEPRGSTQSRS 365
GG + S +R+DR P GDR F P+ DR F PR DR R
Sbjct: 238 GGDDRPRFSRSRDDR---PSGDRPFRERPKFDRPKFDRPKFDRPRDDRPKFDRPRRDGDG 294
Query: 364 AARGDRFSEPRGDRFSEPRDSSQSRSATRSDRFSEPR-GDRFSEPRDSTQNPQR 206
GDR +F+ PR+ S+ RS SE R GDR PR ++ R
Sbjct: 295 ERGGDR------PKFNRPRERSEGRSDWHEHPRSEGRFGDR---PRRENEDESR 339
Score = 35.4 bits (80), Expect = 0.52
Identities = 33/106 (31%), Positives = 46/106 (43%)
Frame = -3
Query: 547 RHTKRHNDGRGGRNDATGSATRNDRFSEPRGDRFSEPRGDRFSEPRGDRFSEPRGSTQSR 368
R + + ND RG R D + R+ + P +F++ R E +GD PRG + R
Sbjct: 7 RDSDKDNDSRG-RRDRGPAKGRSGKARGPE-KKFAK----RGFEGKGDS-RPPRGDREGR 59
Query: 367 SAARGDRFSEPRGDRFSEPRDSSQSRSATRSDRFSEPRGDRFSEPR 230
R + PR D PR R DR E RG+R +PR
Sbjct: 60 PFRRREEGDAPRRDFSDRPRFK-------RDDRGGEERGERSFKPR 98
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,633,243
Number of Sequences: 1393205
Number of extensions: 10809110
Number of successful extensions: 42086
Number of sequences better than 10.0: 604
Number of HSP's better than 10.0 without gapping: 31696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38674
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
