Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015378A_C01 KMC015378A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173723.1| 10kDa chaperonin (CPN10), putative; protein id:... 159 3e-38
pir||C86365 probable 10kd chaperonin [imported] - Arabidopsis th... 152 2e-36
ref|NP_563961.1| 10 kDa chaperonin (CPN10); protein id: At1g1498... 143 2e-33
sp|Q96539|CH10_BRANA 10 KD CHAPERONIN (PROTEIN CPN10) (PROTEIN G... 142 3e-33
pir||T03585 probable chaperonin 10 - rice gi|2267597|gb|AAB63591... 138 5e-32
>ref|NP_173723.1| 10kDa chaperonin (CPN10), putative; protein id: At1g23100.1,
supported by cDNA: 21053. [Arabidopsis thaliana]
gi|21554204|gb|AAM63283.1| putative 10kd chaperonin
[Arabidopsis thaliana] gi|26450019|dbj|BAC42130.1|
putative 10kd chaperonin [Arabidopsis thaliana]
gi|28827420|gb|AAO50554.1| putative 10kDa chaperonin
(CPN10) protein [Arabidopsis thaliana]
Length = 97
Score = 159 bits (401), Expect = 3e-38
Identities = 76/97 (78%), Positives = 89/97 (91%)
Frame = -2
Query: 548 MAKRFLPSLNRVLIEKILPPTKTSGGILLPEKSSQLNSGKVIAVGPGSRDRAGNLIPVSV 369
MAKR +P+LNRVL+EKILPP+KT GILLPEKSSQLNSG+VIAVGPG+RDRAGNLIPVSV
Sbjct: 1 MAKRLIPTLNRVLVEKILPPSKTVSGILLPEKSSQLNSGRVIAVGPGARDRAGNLIPVSV 60
Query: 368 KEGDQVLLPEYGGSQIKLDDKEFLLFRDEDILGILRD 258
KEGD VLLPE+GG+Q+KL +KEFLL+RDEDI+ L +
Sbjct: 61 KEGDNVLLPEFGGTQVKLGEKEFLLYRDEDIMATLHE 97
>pir||C86365 probable 10kd chaperonin [imported] - Arabidopsis thaliana
gi|2829901|gb|AAC00609.1| putative 10kd chaperonin
[Arabidopsis thaliana]
Length = 102
Score = 152 bits (385), Expect = 2e-36
Identities = 76/102 (74%), Positives = 89/102 (86%), Gaps = 5/102 (4%)
Frame = -2
Query: 548 MAKRFLPSLNRVLIEKILPPTKTSGGILLPEKSSQLNSGKVIAVGPGSRDRAGNLIPVSV 369
MAKR +P+LNRVL+EKILPP+KT GILLPEKSSQLNSG+VIAVGPG+RDRAGNLIPVSV
Sbjct: 1 MAKRLIPTLNRVLVEKILPPSKTVSGILLPEKSSQLNSGRVIAVGPGARDRAGNLIPVSV 60
Query: 368 KEGDQVLLPEYGGSQIKLDDKE-----FLLFRDEDILGILRD 258
KEGD VLLPE+GG+Q+KL +KE FLL+RDEDI+ L +
Sbjct: 61 KEGDNVLLPEFGGTQVKLGEKEYVLNLFLLYRDEDIMATLHE 102
>ref|NP_563961.1| 10 kDa chaperonin (CPN10); protein id: At1g14980.1, supported by
cDNA: 26943., supported by cDNA: gi_11990457, supported
by cDNA: gi_166661, supported by cDNA: gi_17380943,
supported by cDNA: gi_20258950 [Arabidopsis thaliana]
gi|461729|sp|P34893|CH10_ARATH 10 kDa chaperonin
(Protein CPN10) (Protein groES) gi|2146744|pir||S65597
chaperonin groES homolog - Arabidopsis thaliana
gi|166662|gb|AAA32767.1| 10 kDa chaperonin
gi|6899643|gb|AAF31020.1|AC012189_2 Strong similarity to
10 KD chaperonin (protein CPN10) from Arabidopsis
thaliana gb|L02843 containing Chaperonins subunit
PF|00166. ESTs gb|Z29788, gb|AW004265 come from this
gene gi|11990458|dbj|BAA13588.2| mitochondrial
chaperonin 10 [Arabidopsis thaliana]
gi|17380944|gb|AAL36284.1| putative chaperonin CPN10
protein [Arabidopsis thaliana]
gi|20258951|gb|AAM14191.1| putative chaperonin CPN10
protein [Arabidopsis thaliana]
gi|21555041|gb|AAM63762.1| chaperonin CPN10 [Arabidopsis
thaliana]
Length = 98
Score = 143 bits (360), Expect = 2e-33
Identities = 66/97 (68%), Positives = 82/97 (84%)
Frame = -2
Query: 548 MAKRFLPSLNRVLIEKILPPTKTSGGILLPEKSSQLNSGKVIAVGPGSRDRAGNLIPVSV 369
M KR +P+ NR+L+++++ P KT GILLPEKSS+LNSGKVIAVGPGSRD+ G LIPVSV
Sbjct: 1 MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSV 60
Query: 368 KEGDQVLLPEYGGSQIKLDDKEFLLFRDEDILGILRD 258
KEGD VLLPEYGG+Q+KL + E+ LFRDED+LG L +
Sbjct: 61 KEGDTVLLPEYGGTQVKLGENEYHLFRDEDVLGTLHE 97
>sp|Q96539|CH10_BRANA 10 KD CHAPERONIN (PROTEIN CPN10) (PROTEIN GROES)
gi|1519241|gb|AAB07452.1| 10 kDa chaperonin
Length = 98
Score = 142 bits (358), Expect = 3e-33
Identities = 66/97 (68%), Positives = 82/97 (84%)
Frame = -2
Query: 548 MAKRFLPSLNRVLIEKILPPTKTSGGILLPEKSSQLNSGKVIAVGPGSRDRAGNLIPVSV 369
M KR +P+ NR+L++ ++ P KT GILLPEK+S+LNSGKVIAVGPGSRD+ G LIPVSV
Sbjct: 1 MMKRLIPTFNRILVQGVIQPAKTESGILLPEKASKLNSGKVIAVGPGSRDKDGKLIPVSV 60
Query: 368 KEGDQVLLPEYGGSQIKLDDKEFLLFRDEDILGILRD 258
KEGD VLLPEYGG+Q+KL +KE+ LFRDED+LG L +
Sbjct: 61 KEGDTVLLPEYGGTQVKLGEKEYHLFRDEDVLGTLHE 97
>pir||T03585 probable chaperonin 10 - rice gi|2267597|gb|AAB63591.1| 10 kDa
chaperonin [Oryza sativa]
Length = 98
Score = 138 bits (348), Expect = 5e-32
Identities = 68/98 (69%), Positives = 83/98 (84%), Gaps = 1/98 (1%)
Frame = -2
Query: 548 MAKRFLPSLNRVLIEKILPPTKTSGGILLPEKSSQLNSGKVIAVGPGSRDRAGNLIPVSV 369
MAKR +PSLNRVL+EK++ P K++GGILLPE S QLNSGKV+AVGPG RD+ G LIPV++
Sbjct: 1 MAKRLIPSLNRVLVEKLVQPKKSAGGILLPETSKQLNSGKVVAVGPGERDKDGKLIPVAL 60
Query: 368 KEGDQVLLPEYGGSQIKL-DDKEFLLFRDEDILGILRD 258
KEGD VLLPEYGG ++KL +KE+LLFR+ DILG L D
Sbjct: 61 KEGDTVLLPEYGGLEVKLAAEKEYLLFREHDILGTLVD 98
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,083,352
Number of Sequences: 1393205
Number of extensions: 11816819
Number of successful extensions: 34794
Number of sequences better than 10.0: 357
Number of HSP's better than 10.0 without gapping: 33231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34569
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
