Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015371A_C01 KMC015371A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H84462 hypothetical protein At2g04900 [imported] - Arabidop... 127 6e-29
gb|AAL32884.1| Unknown protein [Arabidopsis thaliana] gi|2014854... 127 6e-29
ref|NP_565317.1| expressed protein; protein id: At2g04900.1, sup... 127 6e-29
gb|AAF71315.1| unknown [Agropyron cristatum] 110 6e-24
gb|AAF71304.1| unknown [Leymus cinereus] 109 2e-23
>pir||H84462 hypothetical protein At2g04900 [imported] - Arabidopsis thaliana
Length = 97
Score = 127 bits (319), Expect = 6e-29
Identities = 60/75 (80%), Positives = 65/75 (86%)
Frame = -3
Query: 468 KVWYTASLYHLVHTAALLDAPITKHPNAFGALLTAGIVAFSGTCYTVAFLEDRKYSTLAP 289
+VW TASLYHLVHTAAL+ AP TK+PN FG LLTAGIVAFSGTCY VA EDRK+STLAP
Sbjct: 23 QVWQTASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSGTCYMVALREDRKFSTLAP 82
Query: 288 FGGFAFIAAWGSLFF 244
FGGFAFIAAW +L F
Sbjct: 83 FGGFAFIAAWATLLF 97
>gb|AAL32884.1| Unknown protein [Arabidopsis thaliana] gi|20148549|gb|AAM10165.1|
unknown protein [Arabidopsis thaliana]
gi|21592910|gb|AAM64860.1| unknown [Arabidopsis
thaliana]
Length = 111
Score = 127 bits (319), Expect = 6e-29
Identities = 60/75 (80%), Positives = 65/75 (86%)
Frame = -3
Query: 468 KVWYTASLYHLVHTAALLDAPITKHPNAFGALLTAGIVAFSGTCYTVAFLEDRKYSTLAP 289
+VW TASLYHLVHTAAL+ AP TK+PN FG LLTAGIVAFSGTCY VA EDRK+STLAP
Sbjct: 37 QVWQTASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSGTCYMVALREDRKFSTLAP 96
Query: 288 FGGFAFIAAWGSLFF 244
FGGFAFIAAW +L F
Sbjct: 97 FGGFAFIAAWATLLF 111
>ref|NP_565317.1| expressed protein; protein id: At2g04900.1, supported by cDNA:
34035. [Arabidopsis thaliana] gi|20197981|gb|AAM15336.1|
expressed protein [Arabidopsis thaliana]
gi|20198199|gb|AAD25581.2| expressed protein
[Arabidopsis thaliana]
Length = 128
Score = 127 bits (319), Expect = 6e-29
Identities = 60/75 (80%), Positives = 65/75 (86%)
Frame = -3
Query: 468 KVWYTASLYHLVHTAALLDAPITKHPNAFGALLTAGIVAFSGTCYTVAFLEDRKYSTLAP 289
+VW TASLYHLVHTAAL+ AP TK+PN FG LLTAGIVAFSGTCY VA EDRK+STLAP
Sbjct: 54 QVWQTASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSGTCYMVALREDRKFSTLAP 113
Query: 288 FGGFAFIAAWGSLFF 244
FGGFAFIAAW +L F
Sbjct: 114 FGGFAFIAAWATLLF 128
>gb|AAF71315.1| unknown [Agropyron cristatum]
Length = 108
Score = 110 bits (276), Expect = 6e-24
Identities = 51/66 (77%), Positives = 57/66 (86%)
Frame = -3
Query: 468 KVWYTASLYHLVHTAALLDAPITKHPNAFGALLTAGIVAFSGTCYTVAFLEDRKYSTLAP 289
++W TASLYHLVHTAALL AP+TK PN FG LLT GIV FSGTCYTVA+LEDRK+S+ AP
Sbjct: 43 EIWQTASLYHLVHTAALLGAPMTKRPNIFGGLLTTGIVLFSGTCYTVAYLEDRKFSSPAP 102
Query: 288 FGGFAF 271
GGFAF
Sbjct: 103 IGGFAF 108
>gb|AAF71304.1| unknown [Leymus cinereus]
Length = 108
Score = 109 bits (272), Expect = 2e-23
Identities = 50/66 (75%), Positives = 57/66 (85%)
Frame = -3
Query: 468 KVWYTASLYHLVHTAALLDAPITKHPNAFGALLTAGIVAFSGTCYTVAFLEDRKYSTLAP 289
++W TASLYHLVHTAALL AP+TK PN FG LLT GIV FSGTCY+VA+LEDRK+S+ AP
Sbjct: 43 EIWQTASLYHLVHTAALLGAPMTKRPNIFGGLLTTGIVLFSGTCYSVAYLEDRKFSSPAP 102
Query: 288 FGGFAF 271
GGFAF
Sbjct: 103 IGGFAF 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,310,771
Number of Sequences: 1393205
Number of extensions: 8774655
Number of successful extensions: 18418
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 17879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18364
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
