KMC015365A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC015365A_C01 KMC015365A_c01
acccaattaacaatatATGAAAGGGAACCATAATTAACCAACACAAAACAGTGTTCACAT
AAATTCCAAAACTATTAAAACCGAAATATCCAAACAGTCATAGCGATTAAGGTAAAATGT
CTACCCACTATTCAAACATAAATGACCAAAACTTCATAAATTCAAATAGAGAAAAACTCA
TTACGCAGCAGCCTTCTGGTAAACATAGGTGAGCCCGCACTTCCCACAGTAATGGCGATC
AAAATGGTTCGCCATGAAAGTCCCAGCACCGCACTCCGCATTAGGGCACTCCTTCCTCAA
CCTCTGAACCTTGCCAGAGTCATCAACCTTGTAGAACTGCAACACAGCGAGCTTAACCTT
CCTATGCTTGTGCTTGATCTTCTTGGGCTTGGTGTAGGTCTTCTTCTTGCGCTTCTTAGC
GCCACCGCGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGC
AAGTGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGnGG
GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGGATGACTCCAC
C
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015365A_C01 KMC015365A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S40240 ubiquitin/ribosomal protein S27a fusion protein - wh... 281 6e-75
gb|AAL66206.1|AF386524_1 ubiquitin extension protein [Pyrus comm... 279 2e-74
pir||S40239 ubiquitin/ribosomal protein S27a fusion protein - wh... 279 2e-74
pir||T52334 ubiquitin extension protein [imported] - potato gi|1... 279 2e-74
pir||T52335 ubiquitin extension protein [imported] - common toba... 278 3e-74
>pir||S40240 ubiquitin/ribosomal protein S27a fusion protein - white lupine
gi|438111|emb|CAA80334.1| ubiquitin extension protein
[Lupinus albus]
Length = 155
Score = 281 bits (718), Expect = 6e-75
Identities = 136/139 (97%), Positives = 137/139 (97%)
Frame = -2
Query: 600 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 421
VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
Query: 420 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 241
AKKRKKKTYTKPKKIKHKH+KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF
Sbjct: 77 AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 136
Query: 240 DRHYCGKCGLTYVYQKAAA 184
DRHYCGKCG TYVYQKA A
Sbjct: 137 DRHYCGKCGQTYVYQKADA 155
>gb|AAL66206.1|AF386524_1 ubiquitin extension protein [Pyrus communis]
Length = 154
Score = 279 bits (714), Expect = 2e-74
Identities = 135/137 (98%), Positives = 136/137 (98%)
Frame = -2
Query: 600 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 421
VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
Query: 420 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 241
AKKRKKKTYTKPKKIKHKH+KVKLAVLQFYKVDDS KVQRLRKECPNAECGAGTFMANHF
Sbjct: 77 AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSRKVQRLRKECPNAECGAGTFMANHF 136
Query: 240 DRHYCGKCGLTYVYQKA 190
DRHYCGKCGLTYVYQKA
Sbjct: 137 DRHYCGKCGLTYVYQKA 153
>pir||S40239 ubiquitin/ribosomal protein S27a fusion protein - white lupine
gi|438109|emb|CAA80333.1| ubiquitin extension protein
[Lupinus albus]
Length = 155
Score = 279 bits (714), Expect = 2e-74
Identities = 135/139 (97%), Positives = 136/139 (97%)
Frame = -2
Query: 600 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 421
VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
Query: 420 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 241
AKKRKKKTYTKPKKIKHKH+KVKLAVLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHF
Sbjct: 77 AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHF 136
Query: 240 DRHYCGKCGLTYVYQKAAA 184
DRHYCGKCG TYVYQKA A
Sbjct: 137 DRHYCGKCGKTYVYQKADA 155
>pir||T52334 ubiquitin extension protein [imported] - potato
gi|1771780|emb|CAA71132.1| ubiquitin extension protein
[Solanum tuberosum]
Length = 156
Score = 279 bits (713), Expect = 2e-74
Identities = 135/137 (98%), Positives = 136/137 (98%)
Frame = -2
Query: 600 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 421
VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
Query: 420 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 241
AKKRKKKTYTKPKKIKHK +KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF
Sbjct: 77 AKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 136
Query: 240 DRHYCGKCGLTYVYQKA 190
DRHYCGKCGLTYVYQKA
Sbjct: 137 DRHYCGKCGLTYVYQKA 153
>pir||T52335 ubiquitin extension protein [imported] - common tobacco
gi|2894306|emb|CAA11268.1| ubiquitin extension protein
[Nicotiana tabacum]
Length = 156
Score = 278 bits (712), Expect = 3e-74
Identities = 135/139 (97%), Positives = 136/139 (97%)
Frame = -2
Query: 600 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 421
VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
Query: 420 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 241
AKKRKKKTYTKPKKIKHK +KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF
Sbjct: 77 AKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 136
Query: 240 DRHYCGKCGLTYVYQKAAA 184
DRHYCGKCGLTYVY KA A
Sbjct: 137 DRHYCGKCGLTYVYNKAGA 155
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,460,459
Number of Sequences: 1393205
Number of extensions: 13105651
Number of successful extensions: 56301
Number of sequences better than 10.0: 1232
Number of HSP's better than 10.0 without gapping: 48382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55150
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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|
|
|
clone |
accession |
position |
1 |
SPDL069a08_f |
BP056254 |
1 |
521 |
2 |
MF012b02_f |
BP028846 |
17 |
300 |
3 |
MWM081g03_f |
AV766057 |
36 |
602 |
4 |
MFB087d06_f |
BP040358 |
36 |
496 |
|
Lotus japonicus
Kazusa DNA Research Institute