KMC015365A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC015365A_C01 KMC015365A_c01
acccaattaacaatatATGAAAGGGAACCATAATTAACCAACACAAAACAGTGTTCACAT
AAATTCCAAAACTATTAAAACCGAAATATCCAAACAGTCATAGCGATTAAGGTAAAATGT
CTACCCACTATTCAAACATAAATGACCAAAACTTCATAAATTCAAATAGAGAAAAACTCA
TTACGCAGCAGCCTTCTGGTAAACATAGGTGAGCCCGCACTTCCCACAGTAATGGCGATC
AAAATGGTTCGCCATGAAAGTCCCAGCACCGCACTCCGCATTAGGGCACTCCTTCCTCAA
CCTCTGAACCTTGCCAGAGTCATCAACCTTGTAGAACTGCAACACAGCGAGCTTAACCTT
CCTATGCTTGTGCTTGATCTTCTTGGGCTTGGTGTAGGTCTTCTTCTTGCGCTTCTTAGC
GCCACCGCGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGC
AAGTGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGnGG
GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGGATGACTCCAC
C


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC015365A_C01 KMC015365A_c01
         (601 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||S40240 ubiquitin/ribosomal protein S27a fusion protein - wh...   281  6e-75
gb|AAL66206.1|AF386524_1 ubiquitin extension protein [Pyrus comm...   279  2e-74
pir||S40239 ubiquitin/ribosomal protein S27a fusion protein - wh...   279  2e-74
pir||T52334 ubiquitin extension protein [imported] - potato gi|1...   279  2e-74
pir||T52335 ubiquitin extension protein [imported] - common toba...   278  3e-74

>pir||S40240 ubiquitin/ribosomal protein S27a fusion protein - white lupine
           gi|438111|emb|CAA80334.1| ubiquitin extension protein
           [Lupinus albus]
          Length = 155

 Score =  281 bits (718), Expect = 6e-75
 Identities = 136/139 (97%), Positives = 137/139 (97%)
 Frame = -2

Query: 600 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 421
           VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 17  VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

Query: 420 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 241
           AKKRKKKTYTKPKKIKHKH+KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF
Sbjct: 77  AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 136

Query: 240 DRHYCGKCGLTYVYQKAAA 184
           DRHYCGKCG TYVYQKA A
Sbjct: 137 DRHYCGKCGQTYVYQKADA 155

>gb|AAL66206.1|AF386524_1 ubiquitin extension protein [Pyrus communis]
          Length = 154

 Score =  279 bits (714), Expect = 2e-74
 Identities = 135/137 (98%), Positives = 136/137 (98%)
 Frame = -2

Query: 600 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 421
           VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 17  VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

Query: 420 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 241
           AKKRKKKTYTKPKKIKHKH+KVKLAVLQFYKVDDS KVQRLRKECPNAECGAGTFMANHF
Sbjct: 77  AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSRKVQRLRKECPNAECGAGTFMANHF 136

Query: 240 DRHYCGKCGLTYVYQKA 190
           DRHYCGKCGLTYVYQKA
Sbjct: 137 DRHYCGKCGLTYVYQKA 153

>pir||S40239 ubiquitin/ribosomal protein S27a fusion protein - white lupine
           gi|438109|emb|CAA80333.1| ubiquitin extension protein
           [Lupinus albus]
          Length = 155

 Score =  279 bits (714), Expect = 2e-74
 Identities = 135/139 (97%), Positives = 136/139 (97%)
 Frame = -2

Query: 600 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 421
           VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 17  VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

Query: 420 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 241
           AKKRKKKTYTKPKKIKHKH+KVKLAVLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHF
Sbjct: 77  AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHF 136

Query: 240 DRHYCGKCGLTYVYQKAAA 184
           DRHYCGKCG TYVYQKA A
Sbjct: 137 DRHYCGKCGKTYVYQKADA 155

>pir||T52334 ubiquitin extension protein [imported] - potato
           gi|1771780|emb|CAA71132.1| ubiquitin extension protein
           [Solanum tuberosum]
          Length = 156

 Score =  279 bits (713), Expect = 2e-74
 Identities = 135/137 (98%), Positives = 136/137 (98%)
 Frame = -2

Query: 600 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 421
           VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 17  VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

Query: 420 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 241
           AKKRKKKTYTKPKKIKHK +KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF
Sbjct: 77  AKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 136

Query: 240 DRHYCGKCGLTYVYQKA 190
           DRHYCGKCGLTYVYQKA
Sbjct: 137 DRHYCGKCGLTYVYQKA 153

>pir||T52335 ubiquitin extension protein [imported] - common tobacco
           gi|2894306|emb|CAA11268.1| ubiquitin extension protein
           [Nicotiana tabacum]
          Length = 156

 Score =  278 bits (712), Expect = 3e-74
 Identities = 135/139 (97%), Positives = 136/139 (97%)
 Frame = -2

Query: 600 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 421
           VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 17  VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

Query: 420 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 241
           AKKRKKKTYTKPKKIKHK +KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF
Sbjct: 77  AKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 136

Query: 240 DRHYCGKCGLTYVYQKAAA 184
           DRHYCGKCGLTYVY KA A
Sbjct: 137 DRHYCGKCGLTYVYNKAGA 155

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,460,459
Number of Sequences: 1393205
Number of extensions: 13105651
Number of successful extensions: 56301
Number of sequences better than 10.0: 1232
Number of HSP's better than 10.0 without gapping: 48382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55150
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPDL069a08_f BP056254 1 521
2 MF012b02_f BP028846 17 300
3 MWM081g03_f AV766057 36 602
4 MFB087d06_f BP040358 36 496




Lotus japonicus
Kazusa DNA Research Institute