Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015351A_C01 KMC015351A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084834.1| ribosomal protein L16 [Lotus japonicus] gi|2382... 275 4e-73
sp|P42353|RK16_VIGUN CHLOROPLAST 50S RIBOSOMAL PROTEIN L16 gi|74... 258 5e-68
gb|AAN04889.1| ribosomal protein L16 [Vigna angularis] 258 5e-68
ref|NP_051095.1| ribosomal protein L16 [Arabidopsis thaliana] gi... 256 2e-67
ref|NP_054972.1| ribosomal protein L16 [Spinacia oleracea] gi|19... 256 2e-67
>ref|NP_084834.1| ribosomal protein L16 [Lotus japonicus]
gi|23822033|sp|Q9BBP9|RK16_LOTJA Chloroplast 50S
ribosomal protein L16 gi|13359016|dbj|BAB33233.1|
ribosomal protein L16 [Lotus japonicus]
Length = 135
Score = 275 bits (702), Expect = 4e-73
Identities = 135/135 (100%), Positives = 135/135 (100%)
Frame = -1
Query: 526 MLSPKRTRFRKQHRGRMKGISHRGNQICFGRYALQALEPAWITSRQIEAGRRAMSRNVRR 347
MLSPKRTRFRKQHRGRMKGISHRGNQICFGRYALQALEPAWITSRQIEAGRRAMSRNVRR
Sbjct: 1 MLSPKRTRFRKQHRGRMKGISHRGNQICFGRYALQALEPAWITSRQIEAGRRAMSRNVRR 60
Query: 346 GGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKIVYEMGGVAENIARKAISI 167
GGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKIVYEMGGVAENIARKAISI
Sbjct: 61 GGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKIVYEMGGVAENIARKAISI 120
Query: 166 AASKMPIRTQFIISG 122
AASKMPIRTQFIISG
Sbjct: 121 AASKMPIRTQFIISG 135
>sp|P42353|RK16_VIGUN CHLOROPLAST 50S RIBOSOMAL PROTEIN L16 gi|7440878|pir||T09650
ribosomal protein L16 - Vigna unguiculata chloroplast
(fragment) gi|454860|gb|AAA84718.1| ribosomal protein
L16
Length = 137
Score = 258 bits (658), Expect = 5e-68
Identities = 125/133 (93%), Positives = 130/133 (96%)
Frame = -1
Query: 520 SPKRTRFRKQHRGRMKGISHRGNQICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGG 341
+P+RTRFRKQHRGRMKGIS+RGN ICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGG
Sbjct: 5 NPQRTRFRKQHRGRMKGISYRGNNICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGG 64
Query: 340 QIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKIVYEMGGVAENIARKAISIAA 161
QIWVRIFPDKPVTVRPTETRMGSGKG PEYWVAVVKPGKI+YEMGGV ENIARKAISIA+
Sbjct: 65 QIWVRIFPDKPVTVRPTETRMGSGKGFPEYWVAVVKPGKILYEMGGVPENIARKAISIAS 124
Query: 160 SKMPIRTQFIISG 122
SKMPIRTQFIISG
Sbjct: 125 SKMPIRTQFIISG 137
>gb|AAN04889.1| ribosomal protein L16 [Vigna angularis]
Length = 136
Score = 258 bits (658), Expect = 5e-68
Identities = 125/133 (93%), Positives = 130/133 (96%)
Frame = -1
Query: 520 SPKRTRFRKQHRGRMKGISHRGNQICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGG 341
+P+RTRFRKQHRGRMKGIS+RGN ICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGG
Sbjct: 4 NPQRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGG 63
Query: 340 QIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKIVYEMGGVAENIARKAISIAA 161
QIWVRIFPDKPVTVRPTETRMGSGKG PEYWVAVVKPGKI+YEMGGV ENIARKAISIA+
Sbjct: 64 QIWVRIFPDKPVTVRPTETRMGSGKGFPEYWVAVVKPGKILYEMGGVPENIARKAISIAS 123
Query: 160 SKMPIRTQFIISG 122
SKMPIRTQFIISG
Sbjct: 124 SKMPIRTQFIISG 136
>ref|NP_051095.1| ribosomal protein L16 [Arabidopsis thaliana]
gi|6685863|sp|P56793|RK16_ARATH Chloroplast 50S
ribosomal protein L16 gi|5881731|dbj|BAA84422.1|
ribosomal protein L16 [Arabidopsis thaliana]
Length = 135
Score = 256 bits (653), Expect = 2e-67
Identities = 124/134 (92%), Positives = 130/134 (96%)
Frame = -1
Query: 526 MLSPKRTRFRKQHRGRMKGISHRGNQICFGRYALQALEPAWITSRQIEAGRRAMSRNVRR 347
MLSPKRTRFRKQHRGR+KGIS RGN+ICFGRYALQ LEPAWITSRQIEAGRRAM+RNVRR
Sbjct: 1 MLSPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRR 60
Query: 346 GGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKIVYEMGGVAENIARKAISI 167
GG+IWVRIFPDKPVTVRP ETRMGSGKGSPEYWVAVVKPGKI+YEMGGV ENIARKAISI
Sbjct: 61 GGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISI 120
Query: 166 AASKMPIRTQFIIS 125
AASKMPI+TQFIIS
Sbjct: 121 AASKMPIKTQFIIS 134
>ref|NP_054972.1| ribosomal protein L16 [Spinacia oleracea]
gi|19856541|sp|P17353|RK16_SPIOL Chloroplast 50S
ribosomal protein L16 (Ribosomal protein CS-L24)
gi|7636145|emb|CAB88765.1| ribosomal protein L16
[Spinacia oleracea]
Length = 135
Score = 256 bits (653), Expect = 2e-67
Identities = 122/135 (90%), Positives = 132/135 (97%)
Frame = -1
Query: 526 MLSPKRTRFRKQHRGRMKGISHRGNQICFGRYALQALEPAWITSRQIEAGRRAMSRNVRR 347
MLSPKRTRFRKQHRGRMKGIS+RGN+ICFGRYALQALEPAWITSRQIEAGRRAM+RN RR
Sbjct: 1 MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARR 60
Query: 346 GGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKIVYEMGGVAENIARKAISI 167
GG+IWVRIFPDKPVTVRP ETRMGSGKGSPEYWVAVVKPG+I+YE+ GVAENIAR+A++I
Sbjct: 61 GGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVAI 120
Query: 166 AASKMPIRTQFIISG 122
AASKMPIRTQFIISG
Sbjct: 121 AASKMPIRTQFIISG 135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,652,251
Number of Sequences: 1393205
Number of extensions: 11435900
Number of successful extensions: 30289
Number of sequences better than 10.0: 304
Number of HSP's better than 10.0 without gapping: 28877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30201
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
