Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015350A_C01 KMC015350A_c01
(728 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA06461.1| TED3 [Zinnia elegans] 94 2e-18
gb|AAB35283.1| arabinogalactan-protein; AGP [Pyrus communis] 93 4e-18
pir||T10265 arabinogalactan-protein AGP2 - Persian tobacco gi|10... 80 2e-14
gb|AAA33056.1| 5' start site is putative; putative 72 8e-12
pir||S65063 fiber protein E6 (clones SIE6-2A and SIE6-3B) - sea-... 72 8e-12
>dbj|BAA06461.1| TED3 [Zinnia elegans]
Length = 319
Score = 94.0 bits (232), Expect = 2e-18
Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 29/153 (18%)
Frame = -3
Query: 675 GYPQTNFRSN---YNNEVYTKNYN--------TEGYRSNDNNGKELY---------YNNN 556
GY Q + +N YN +Y+ NYN + GY++ +N Y YN N
Sbjct: 173 GYNQNGYNNNENGYNKNMYSNNYNGYSNSMYESNGYKTENNGENNNYMTFTNENSGYNGN 232
Query: 555 --------NNNYGNNNGYERKREGMSDTRFMENGKYHYNVDTENESYNLNGYDESGRGRT 400
NN Y NNNGY +++GMSDTRF+ENGKY Y+ + ++ + Y+E
Sbjct: 233 RYTSPKEENNGYNNNNGYMAEQQGMSDTRFLENGKYSYDANNNGNNHE-SSYEE--EVSD 289
Query: 399 ENEGYDEKMQNPN-EFDTMEEYEKQPEAQGYTP 304
EGY + P EFDTMEEYEKQ +GY P
Sbjct: 290 NGEGYYRNNEEPKYEFDTMEEYEKQ---EGYVP 319
Score = 55.1 bits (131), Expect = 1e-06
Identities = 39/127 (30%), Positives = 50/127 (38%), Gaps = 6/127 (4%)
Frame = -3
Query: 711 LNEDFKDQSYKTGYPQTNFRSNYNNEVYTKNYNTEGYRSNDNNGKELYYNNNNNNYGNNN 532
LNE+ + + GY Q + + N N GY N N N N N Y N N
Sbjct: 95 LNENHGYSNNENGYNQNGYNNGNGYSQNGYNNNENGYNDNGNTN-----NENENGYNNQN 149
Query: 531 GYERKREGMSDTRFMENGKYHYNVDTENESYNLNGYDESGRGRTEN------EGYDEKMQ 370
GY + DT ENG Y + E YN NGY+ + G +N GY M
Sbjct: 150 GYNQN----GDTN-NENGNNQYGYNNE-IGYNQNGYNNNENGYNKNMYSNNYNGYSNSMY 203
Query: 369 NPNEFDT 349
N + T
Sbjct: 204 ESNGYKT 210
Score = 50.1 bits (118), Expect = 3e-05
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Frame = -3
Query: 642 NNEVYTKNYNTEGYRSNDNNGKELYYNNNNN-----NYGNNNGYERKREGMSDTRFMENG 478
NN Y+ N N N+N+G Y+NN N Y N NGY + ++ + +NG
Sbjct: 80 NNNGYSNNGNGYSNSLNENHG----YSNNENGYNQNGYNNGNGYSQNGYNNNENGYNDNG 135
Query: 477 KYHYNVDTENESYNLNGYDESGRGRTEN----EGYDEKM-QNPNEFDTMEE-YEKQPEAQ 316
+ N + EN N NGY+++G EN GY+ ++ N N ++ E Y K +
Sbjct: 136 --NTNNENENGYNNQNGYNQNGDTNNENGNNQYGYNNEIGYNQNGYNNNENGYNKNMYSN 193
Query: 315 GY 310
Y
Sbjct: 194 NY 195
Score = 48.1 bits (113), Expect = 1e-04
Identities = 36/130 (27%), Positives = 55/130 (41%), Gaps = 5/130 (3%)
Frame = -3
Query: 714 LLNEDFKDQSYKTGYPQTNFRSNYNNEVYTKNYNTEGYRSNDNNGKELYYNNNNNNYGN- 538
L NE +D+ + F S+ + K +++ Y +N+N Y+NN N Y N
Sbjct: 41 LENETLEDEEEEETNDGDEF-SSQKETPFEKLLSSQSYSTNNNG-----YSNNGNGYSNS 94
Query: 537 ---NNGYERKREGMSDTRFMENGKYHYNVDTENESYNLNGYDESGRGRTENE-GYDEKMQ 370
N+GY G + + Y N NE NGY+++G ENE GY+ +
Sbjct: 95 LNENHGYSNNENGYNQNGYNNGNGYSQNGYNNNE----NGYNDNGNTNNENENGYNNQNG 150
Query: 369 NPNEFDTMEE 340
DT E
Sbjct: 151 YNQNGDTNNE 160
>gb|AAB35283.1| arabinogalactan-protein; AGP [Pyrus communis]
Length = 294
Score = 92.8 bits (229), Expect = 4e-18
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 41/181 (22%)
Frame = -3
Query: 723 ENELLNEDFKDQSY---KTGYPQTNF--RSNYN-------NEVYTKNYNTEG-YRSNDNN 583
E+++L+E+ +S+ K Y TN + N N N Y KNY+ G Y N
Sbjct: 114 EDQILSEELSGESFDHPKGNYESTNLFNKDNINQNTGYTGNSYYVKNYDGRGGYNRNPPG 173
Query: 582 G------------KELYYNNNN---NNYGNNNGYER----------KREGMSDTRFMENG 478
G +++ Y N+ NY GY R +++GMSDTRF+ENG
Sbjct: 174 GGNGISEQQGISNQDIGYTGNSYYVKNYDGRGGYNRNPPGGGNEISEQQGMSDTRFLENG 233
Query: 477 KYHYNVDTENESYNLNGYDES-GRGRTEN--EGYDEKMQNPNEFDTMEEYEKQPEAQGYT 307
KY+++V E ++ N NG ES GRG N E Y + NEF+TMEEY+K + QGY
Sbjct: 234 KYYHDVKNEIKNNNFNGNSESDGRGSNRNDVERYYANSHSSNEFNTMEEYDKYQKTQGYV 293
Query: 306 P 304
P
Sbjct: 294 P 294
>pir||T10265 arabinogalactan-protein AGP2 - Persian tobacco
gi|1087017|gb|AAB35284.1| arabinogalactan-protein; AGP
[Nicotiana alata]
Length = 461
Score = 80.5 bits (197), Expect = 2e-14
Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 9/91 (9%)
Frame = -3
Query: 660 NFRSNYNNEVYTKNYNTEGYRSNDNNGKELYYNNNNNNYG---------NNNGYERKREG 508
N+ +N NN V+++NYN +N+NN YNNNNN Y NNN +R+G
Sbjct: 317 NYNNNNNNNVFSENYNN----NNNNNAFYENYNNNNNGYSENYNQASSYNNNDNTVERQG 372
Query: 507 MSDTRFMENGKYHYNVDTENESYNLNGYDES 415
+SDTRF+ENGKY+Y D +NE+ N NGY E+
Sbjct: 373 LSDTRFLENGKYYY--DIKNENTNNNGYSEN 401
Score = 60.5 bits (145), Expect = 2e-08
Identities = 39/120 (32%), Positives = 54/120 (44%), Gaps = 6/120 (5%)
Frame = -3
Query: 702 DFKDQSYKTGYPQTNFRSNYNNEVYTKNYNTEGYRSNDNNGKELYYNNNNNNYGNNNGYE 523
D + GY N +N N++ +++NYN GY N NN Y+ N NN NNNGY
Sbjct: 181 DSNNNDNNNGYDSNN-NNNNNDDGFSENYNNNGYSENANNKNNNGYSENYNN-NNNNGYA 238
Query: 522 RK-REGMSDTRFMENGKYHYNVDTEN-----ESYNLNGYDESGRGRTENEGYDEKMQNPN 361
+ G S + N Y N + N E+ N NGY + + N GY + N N
Sbjct: 239 KNYNNGYSQSYNNNNNFYSENYNNNNNNVFSENSNNNGYSK----KINNNGYSQNYMNNN 294
Score = 57.8 bits (138), Expect = 2e-07
Identities = 40/119 (33%), Positives = 53/119 (43%), Gaps = 30/119 (25%)
Frame = -3
Query: 708 NEDFKDQSYKTGYPQTNFRSNYNNEV--YTKNYN-TEGYRSNDN--------------NG 580
N + ++Y F NYNN Y++NYN Y +NDN NG
Sbjct: 323 NNNVFSENYNNNNNNNAFYENYNNNNNGYSENYNQASSYNNNDNTVERQGLSDTRFLENG 382
Query: 579 KELY----YNNNNNNYG---------NNNGYERKREGMSDTRFMENGKYHYNVDTENES 442
K Y N NNN Y NNN +R+G+SDTRF++NG Y Y+ + E S
Sbjct: 383 KYYYDIKNENTNNNGYSENYNHVSSYNNNNNMVERQGLSDTRFLDNGNYFYSNNGEKMS 441
Score = 52.0 bits (123), Expect = 9e-06
Identities = 41/122 (33%), Positives = 55/122 (44%), Gaps = 16/122 (13%)
Frame = -3
Query: 624 KNYNTEGYRSNDN---NGKELYYNNNNNNYG-----NNNGYERKREGMSDTRFMENGKYH 469
++YN GY SN+N NG + NNNNN+ G NNNGY ++ + EN
Sbjct: 173 ESYNNNGYDSNNNDNNNGYDSNNNNNNNDDGFSENYNNNGYSENANNKNNNGYSEN---- 228
Query: 468 YNVDTEN---ESYNLNGYDESGRGRTENEGYDEKMQNPN-----EFDTMEEYEKQPEAQG 313
YN + N ++YN NGY +S N Y E N N E Y K+ G
Sbjct: 229 YNNNNNNGYAKNYN-NGYSQS--YNNNNNFYSENYNNNNNNVFSENSNNNGYSKKINNNG 285
Query: 312 YT 307
Y+
Sbjct: 286 YS 287
Score = 47.8 bits (112), Expect = 2e-04
Identities = 36/129 (27%), Positives = 55/129 (41%), Gaps = 18/129 (13%)
Frame = -3
Query: 693 DQSYKTGYPQTN---FRSNYNNEVYTKNYNTEG--YRSNDNNGKELYYNNNNNNYG---- 541
+ Y Y N + NYNN Y+++YN Y N NN ++ N+NN G
Sbjct: 222 NNGYSENYNNNNNNGYAKNYNNG-YSQSYNNNNNFYSENYNNNNNNVFSENSNNNGYSKK 280
Query: 540 -NNNGYER----KREGMSDTRFMENGKYHYNVDTENESYNLNG----YDESGRGRTENEG 388
NNNGY + G S++ + N + N + +E+YN N + E+ N
Sbjct: 281 INNNGYSQNYMNNNNGFSES-YNNNNNNNNNNNVFSENYNNNNNNNVFSENYNNNNNNNA 339
Query: 387 YDEKMQNPN 361
+ E N N
Sbjct: 340 FYENYNNNN 348
Score = 47.0 bits (110), Expect = 3e-04
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Frame = -3
Query: 660 NFRSNYNNEVYTKNYN--TEGYRSNDNN-----GKELYYNNNNN----NYGNNNGYERKR 514
N +YNN Y N N GY SN+NN G YNNN N NNNGY
Sbjct: 170 NTDESYNNNGYDSNNNDNNNGYDSNNNNNNNDDGFSENYNNNGYSENANNKNNNGYSENY 229
Query: 513 EGMSDTRFMEN------GKYHYNVDTENESYNLNGYDESGRGRTENEGYDEKMQN 367
++ + +N Y+ N + +E+YN N + + N GY +K+ N
Sbjct: 230 NNNNNNGYAKNYNNGYSQSYNNNNNFYSENYNNNNNNVFSE-NSNNNGYSKKINN 283
Score = 43.1 bits (100), Expect = 0.004
Identities = 34/104 (32%), Positives = 43/104 (40%), Gaps = 4/104 (3%)
Frame = -3
Query: 636 EVYTKNYNTEGYRSNDNNGKELYYNNN----NNNYGNNNGYERKREGMSDTRFMENGKYH 469
E T +G R N + YNNN NNN NNNGY+ N +
Sbjct: 156 ETQTPAKEFQGARFNTDES----YNNNGYDSNNN-DNNNGYD------------SNNNNN 198
Query: 468 YNVDTENESYNLNGYDESGRGRTENEGYDEKMQNPNEFDTMEEY 337
N D +E+YN NGY E+ + N GY E N N + Y
Sbjct: 199 NNDDGFSENYNNNGYSENANNK-NNNGYSENYNNNNNNGYAKNY 241
>gb|AAA33056.1| 5' start site is putative; putative
Length = 218
Score = 72.0 bits (175), Expect = 8e-12
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Frame = -3
Query: 651 SNYNNEVYTKNYNTEGYRSNDNNGKELYY--------NNNNNNYGNNNGYER-KREGMSD 499
S+ N + Y N N N G+ ++ N NNN Y NNGY +++GMSD
Sbjct: 96 SSNNKDTYYYNKNAYESTKQQNLGEAIFTEKGWSTKENQNNNYYNGNNGYNNGEKQGMSD 155
Query: 498 TRFMENGKYHYNVDTENESYNLNGYDESGRGRTENEGYDEKMQNPNEF-DTMEEYEKQPE 322
TR++ENGKY+Y+V +EN +Y N +D S + NE + + N + EE+E+ E
Sbjct: 156 TRYLENGKYYYDVKSEN-NYYPNRFDNSRGVASRNEFNENRYNNMGRYHQNQEEFEESEE 214
>pir||S65063 fiber protein E6 (clones SIE6-2A and SIE6-3B) - sea-island cotton
gi|1000088|gb|AAB03081.1| E6 gi|1000090|gb|AAB03085.1|
E6
Length = 246
Score = 72.0 bits (175), Expect = 8e-12
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Frame = -3
Query: 651 SNYNNEVYTKNYNTEGYRSNDNNGKELYY--------NNNNNNYGNNNGYER-KREGMSD 499
S+ N + Y N N N G+ ++ N NNN Y NNGY +++GMSD
Sbjct: 124 SSNNKDTYYYNKNAYESTKQQNLGEAIFTEKGWSTKENQNNNYYNGNNGYNNGEKQGMSD 183
Query: 498 TRFMENGKYHYNVDTENESYNLNGYDESGRGRTENEGYDEKMQNPNEF-DTMEEYEKQPE 322
TR++ENGKY+Y+V +EN +Y N +D S + NE + + N + EE+E+ E
Sbjct: 184 TRYLENGKYYYDVKSEN-NYYPNRFDNSRGVASRNEFNENRYNNMGRYHQNQEEFEESEE 242
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,399,726
Number of Sequences: 1393205
Number of extensions: 14612145
Number of successful extensions: 239348
Number of sequences better than 10.0: 3496
Number of HSP's better than 10.0 without gapping: 58906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114829
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
