Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015347A_C01 KMC015347A_c01
(657 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198403.1| 40S ribosomal protein S3; protein id: At5g35530... 210 1e-53
gb|AAK55780.1|AC079038_14 Putative 40S ribosomal protein; contai... 206 2e-52
gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aesti... 202 2e-51
ref|NP_190955.1| 40S ribosomal protein S3, putative; protein id:... 201 7e-51
ref|NP_180719.1| 40S ribosomal protein S3, putative; protein id:... 197 1e-49
>ref|NP_198403.1| 40S ribosomal protein S3; protein id: At5g35530.1, supported by
cDNA: 10394., supported by cDNA: gi_16604317, supported
by cDNA: gi_20466074 [Arabidopsis thaliana]
gi|9758155|dbj|BAB08712.1| 40S ribosomal protein S3
[Arabidopsis thaliana] gi|16604318|gb|AAL24165.1|
AT5g35530/MOK9_14 [Arabidopsis thaliana]
gi|20466075|gb|AAM19959.1| AT5g35530/MOK9_14
[Arabidopsis thaliana]
Length = 248
Score = 210 bits (535), Expect = 1e-53
Identities = 102/122 (83%), Positives = 109/122 (88%)
Frame = -2
Query: 656 AVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVR 477
AVRRACYGVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YID+AVR
Sbjct: 114 AVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVR 173
Query: 476 HVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEDEYIRPAAVSAEEVEVP 297
HVLLRQGVLG+KVKIMLDWDPKGKQGP TPLPD+V IHTPKE+D YI PA V + VP
Sbjct: 174 HVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVTQAAFVP 233
Query: 296 VA 291
A
Sbjct: 234 EA 235
>gb|AAK55780.1|AC079038_14 Putative 40S ribosomal protein; contains C-terminal domain [Oryza
sativa]
Length = 233
Score = 206 bits (524), Expect = 2e-52
Identities = 103/122 (84%), Positives = 108/122 (88%)
Frame = -2
Query: 656 AVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVR 477
AVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG PV YIDSAVR
Sbjct: 116 AVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVR 175
Query: 476 HVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEDEYIRPAAVSAEEVEVP 297
HVLLRQGVLGIKVKIMLDWDPKGKQGP TPLPD+VTIH PK+EDE+ +P E+P
Sbjct: 176 HVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLT-----AEIP 230
Query: 296 VA 291
VA
Sbjct: 231 VA 232
>gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aestivum]
Length = 227
Score = 202 bits (515), Expect = 2e-51
Identities = 100/112 (89%), Positives = 104/112 (92%)
Frame = -2
Query: 656 AVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVR 477
AVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV +YID+AVR
Sbjct: 114 AVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVR 173
Query: 476 HVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEDEYIRPAAV 321
HVLLRQGVLGIKVKIMLDWDPKGK GP TPLPD+VTIH PKEE+E PA V
Sbjct: 174 HVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEENELRPPALV 225
>ref|NP_190955.1| 40S ribosomal protein S3, putative; protein id: At3g53870.1,
supported by cDNA: 9568., supported by cDNA:
gi_14334697, supported by cDNA: gi_16226457, supported
by cDNA: gi_16323403 [Arabidopsis thaliana]
gi|11275277|pir||T45927 ribosomal protein S3a homolog -
Arabidopsis thaliana gi|7630007|emb|CAB88349.1|
ribosomal protein S3a homolog [Arabidopsis thaliana]
gi|14334698|gb|AAK59527.1| putative ribosomal protein
S3a homolog [Arabidopsis thaliana]
gi|16226458|gb|AAL16173.1|AF428405_1 AT3g53870/F5K20_170
[Arabidopsis thaliana] gi|16323404|gb|AAL15196.1|
putative ribosomal protein S3a homolog [Arabidopsis
thaliana] gi|21618068|gb|AAM67118.1| ribosomal protein
S3a-like protein [Arabidopsis thaliana]
Length = 249
Score = 201 bits (511), Expect = 7e-51
Identities = 97/114 (85%), Positives = 104/114 (91%)
Frame = -2
Query: 656 AVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVR 477
AVRRACYGVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YIDSAVR
Sbjct: 114 AVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVR 173
Query: 476 HVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEDEYIRPAAVSA 315
HVLLRQGVLGIKVK+MLDWDPKG GPKTPLPD+V IH+PKEE+ PA V+A
Sbjct: 174 HVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPAQVAA 227
>ref|NP_180719.1| 40S ribosomal protein S3, putative; protein id: At2g31610.1,
supported by cDNA: gi_14190418, supported by cDNA:
gi_15028252, supported by cDNA: gi_15450570, supported
by cDNA: gi_15451083, supported by cDNA: gi_20148376,
supported by cDNA: gi_20258906 [Arabidopsis thaliana]
gi|25294441|pir||H84722 hypothetical protein At2g31610
[imported] - Arabidopsis thaliana
gi|4582468|gb|AAD24852.1| 40S ribosomal protein;
contains C-terminal domain [Arabidopsis thaliana]
gi|14190419|gb|AAK55690.1|AF378887_1 At2g31610/T9H9.13
[Arabidopsis thaliana] gi|15028253|gb|AAK76715.1|
putative 40S ribosomal protein; contains C-terminal
domain [Arabidopsis thaliana] gi|15450571|gb|AAK96463.1|
At2g31610/T9H9.13 [Arabidopsis thaliana]
gi|15451084|gb|AAK96813.1| 40S ribosomal protein
[Arabidopsis thaliana] gi|20148377|gb|AAM10079.1| 40S
ribosomal protein; contains C-terminal domain
[Arabidopsis thaliana] gi|20258907|gb|AAM14147.1|
putative 40S ribosomal protein [Arabidopsis thaliana]
Length = 250
Score = 197 bits (501), Expect = 1e-49
Identities = 95/114 (83%), Positives = 102/114 (89%)
Frame = -2
Query: 656 AVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVR 477
AVRRACYGVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YID+AVR
Sbjct: 114 AVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVR 173
Query: 476 HVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEDEYIRPAAVSA 315
HVLLRQGVLGIKVKIMLDWDP GK GPKTPLPD+V IH PK++ Y PA +A
Sbjct: 174 HVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAA 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,385,914
Number of Sequences: 1393205
Number of extensions: 12018955
Number of successful extensions: 34339
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 33053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34288
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
