Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015339A_C01 KMC015339A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44123.1| N3 like protein [Medicago truncatula] 135 2e-31
ref|NP_199892.1| MtN3-like protein; protein id: At5g50790.1, sup... 87 8e-17
ref|NP_181439.1| similar to MtN3 protein; protein id: At2g39060.... 81 7e-15
gb|AAM63257.1| similar to MtN3 protein [Arabidopsis thaliana] 81 7e-15
gb|AAM65058.1| MtN3-like protein [Arabidopsis thaliana] 78 6e-14
>emb|CAC44123.1| N3 like protein [Medicago truncatula]
Length = 255
Score = 135 bits (340), Expect = 2e-31
Identities = 72/91 (79%), Positives = 75/91 (82%), Gaps = 9/91 (9%)
Frame = -1
Query: 488 PFFLSFSLTINAVMWFFYGMLLRDYYVALPNTLGFVFGIIQMVVYLIYRNATPVVIEEKV 309
PFFLSF LTINAVMWFFYG+LLRDYYVALPNTLGFVFGIIQMVVYLIYRNATPVV E +
Sbjct: 166 PFFLSFFLTINAVMWFFYGLLLRDYYVALPNTLGFVFGIIQMVVYLIYRNATPVV-EAPM 224
Query: 308 KGQEMSGDHIIDVAK---------GGAVSKV 243
KGQE+SG HIIDV K GGA SKV
Sbjct: 225 KGQELSGGHIIDVVKIGTDSNRAGGGAGSKV 255
>ref|NP_199892.1| MtN3-like protein; protein id: At5g50790.1, supported by cDNA:
114681., supported by cDNA: gi_15450935, supported by
cDNA: gi_17978772 [Arabidopsis thaliana]
gi|8777402|dbj|BAA96992.1| MtN3-like protein
[Arabidopsis thaliana] gi|15450936|gb|AAK96739.1|
MtN3-like protein [Arabidopsis thaliana]
gi|17978773|gb|AAL47380.1| MtN3-like protein
[Arabidopsis thaliana] gi|21536902|gb|AAM61234.1|
MtN3-like protein [Arabidopsis thaliana]
Length = 289
Score = 87.4 bits (215), Expect = 8e-17
Identities = 40/76 (52%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Frame = -1
Query: 488 PFFLSFSLTINAVMWFFYGMLLRDYYVALPNTLGFVFGIIQMVVYLIYRNATPVVIEEK- 312
PF LSF LT++AVMWFFYG+LL+D +ALPN LGF+FG++QM+++LIY+ V+E
Sbjct: 165 PFGLSFFLTLSAVMWFFYGLLLKDMNIALPNVLGFIFGVLQMILFLIYKKPGTKVLEPPG 224
Query: 311 VKGQEMSGDHIIDVAK 264
+K Q++S +H++DV +
Sbjct: 225 IKLQDIS-EHVVDVVR 239
>ref|NP_181439.1| similar to MtN3 protein; protein id: At2g39060.1, supported by
cDNA: 20810. [Arabidopsis thaliana]
gi|25354616|pir||F84812 similar to MtN3 protein
[imported] - Arabidopsis thaliana
gi|3928090|gb|AAC79616.1| similar to MtN3 protein
[Arabidopsis thaliana]
Length = 258
Score = 80.9 bits (198), Expect = 7e-15
Identities = 31/52 (59%), Positives = 46/52 (87%)
Frame = -1
Query: 488 PFFLSFSLTINAVMWFFYGMLLRDYYVALPNTLGFVFGIIQMVVYLIYRNAT 333
PF LS SLT+NAVMWFFYG+L++D ++A+PN LGF+FG+ QM++Y++Y+ +T
Sbjct: 165 PFLLSLSLTLNAVMWFFYGLLIKDKFIAMPNILGFLFGVAQMILYMMYQGST 216
>gb|AAM63257.1| similar to MtN3 protein [Arabidopsis thaliana]
Length = 258
Score = 80.9 bits (198), Expect = 7e-15
Identities = 31/52 (59%), Positives = 46/52 (87%)
Frame = -1
Query: 488 PFFLSFSLTINAVMWFFYGMLLRDYYVALPNTLGFVFGIIQMVVYLIYRNAT 333
PF LS SLT+NAVMWFFYG+L++D ++A+PN LGF+FG+ QM++Y++Y+ +T
Sbjct: 165 PFLLSLSLTLNAVMWFFYGLLIKDKFIAMPNILGFLFGVAQMILYMMYQGST 216
>gb|AAM65058.1| MtN3-like protein [Arabidopsis thaliana]
Length = 294
Score = 77.8 bits (190), Expect = 6e-14
Identities = 36/75 (48%), Positives = 53/75 (70%)
Frame = -1
Query: 488 PFFLSFSLTINAVMWFFYGMLLRDYYVALPNTLGFVFGIIQMVVYLIYRNATPVVIEEKV 309
PF LS LTI+AV W FYG+ ++D+YVALPN LG G +QM++Y+I++ V ++
Sbjct: 166 PFSLSLFLTISAVTWLFYGLAIKDFYVALPNVLGAFLGAVQMILYIIFKYYKTPVAQKTD 225
Query: 308 KGQEMSGDHIIDVAK 264
K +++S DH ID+AK
Sbjct: 226 KSKDVS-DHSIDIAK 239
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,257,667
Number of Sequences: 1393205
Number of extensions: 9122453
Number of successful extensions: 27780
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 26782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27755
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
