Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015335A_C01 KMC015335A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200833.1| putative protein; protein id: At5g60250.1 [Arab... 34 1.5
gb|AAF03026.1|AF092414_1 NADH dehydrogenase subunit II [Pteroleb... 33 3.3
ref|NP_445718.1| hypothetical protein [Sulfolobus islandicus fil... 32 5.6
gb|AAF03028.1|AF092415_1 NADH dehydrogenase subunit II [Pteroleb... 32 7.3
ref|NP_377657.1| 184aa long hypothetical protein [Sulfolobus tok... 32 7.3
>ref|NP_200833.1| putative protein; protein id: At5g60250.1 [Arabidopsis thaliana]
gi|8885575|dbj|BAA97505.1|
emb|CAB75487.1~gene_id:F15L12.13~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 655
Score = 33.9 bits (76), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -1
Query: 540 KCISYNGLFSAHCIVPWHAVMNCKECLK 457
+C+ GLF C VPWH ++C E K
Sbjct: 419 RCVECRGLFCVDCKVPWHGNLSCTEYKK 446
>gb|AAF03026.1|AF092414_1 NADH dehydrogenase subunit II [Pterolebias phasianus]
Length = 325
Score = 32.7 bits (73), Expect = 3.3
Identities = 23/86 (26%), Positives = 41/86 (46%)
Frame = -1
Query: 420 GCSCFLHFLFTGWMQLLLQQWEGLKAWTYM*QTLVHIRLHMYHWKSYHSKLDFILNYSIA 241
G S HF GWM L++QQ L + +M ++ + + W +++ D I++ SI+
Sbjct: 180 GYSAIAHF---GWMILVIQQMPELTSLAFMVYVILTSTMFLVFW---YNETDNIISLSIS 233
Query: 240 LGVMRFEVFFWYEFPFILHILSLM*M 163
W + P IL ++ L+ M
Sbjct: 234 ----------WTKMPIILAVIPLILM 249
>ref|NP_445718.1| hypothetical protein [Sulfolobus islandicus filamentous virus]
gi|16751810|gb|AAL27764.1| hypothetical protein
[Sulfolobus islandicus filamentous virus]
Length = 308
Score = 32.0 bits (71), Expect = 5.6
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 7 FFLIPKVTPSYSQVF-LLKYMKVS*NKLLQLNYFEIPIIKHTIYPYKQHFI 156
+ L+P+ T Y+Q+ LLK + +S + LQL + ++ +T+YP Q +I
Sbjct: 208 YSLVPQNTFLYTQLSTLLKILNISSTQQLQLQGVQYYVVGNTVYPISQPYI 258
>gb|AAF03028.1|AF092415_1 NADH dehydrogenase subunit II [Pterolebias longipinnis]
Length = 325
Score = 31.6 bits (70), Expect = 7.3
Identities = 24/84 (28%), Positives = 38/84 (44%)
Frame = -1
Query: 420 GCSCFLHFLFTGWMQLLLQQWEGLKAWTYM*QTLVHIRLHMYHWKSYHSKLDFILNYSIA 241
G S HF GWM L++QQ L + +M T++ + + W ++K + I + SI
Sbjct: 180 GYSAIAHF---GWMILIIQQMPELTSLAFMIYTILTSSMFLMFW---YNKTNNITSLSIT 233
Query: 240 LGVMRFEVFFWYEFPFILHILSLM 169
W + P IL I L+
Sbjct: 234 ----------WTKMPIILIITPLI 247
>ref|NP_377657.1| 184aa long hypothetical protein [Sulfolobus tokodaii]
gi|15622776|dbj|BAB66766.1| 184aa long hypothetical
protein [Sulfolobus tokodaii]
Length = 184
Score = 31.6 bits (70), Expect = 7.3
Identities = 22/86 (25%), Positives = 34/86 (38%)
Frame = -1
Query: 444 GEKDSNRSGCSCFLHFLFTGWMQLLLQQWEGLKAWTYM*QTLVHIRLHMYHWKSYHSKLD 265
GE+ R G F H + W ++LL +W+ +K + + L K YH
Sbjct: 8 GERIIKREGEDPFKHPVVRKWYEILLNEWKSIKPYA--------VLLPCTSIKPYHLSRT 59
Query: 264 FILNYSIALGVMRFEVFFWYEFPFIL 187
L Y+I G F+ P +L
Sbjct: 60 HKLAYAIMRGFEEKVQFYSVSEPMLL 85
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,290,817
Number of Sequences: 1393205
Number of extensions: 10262843
Number of successful extensions: 18331
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18327
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
