Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015324A_C01 KMC015324A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195766.1| putative protein; protein id: At5g01460.1, supp... 72 4e-12
gb|AAK59596.1| unknown protein [Arabidopsis thaliana] gi|2441736... 67 1e-10
ref|NP_566338.1| expressed protein; protein id: At3g08930.1, sup... 67 1e-10
dbj|BAC24841.1| OSJNBa0038F22.20 [Oryza sativa (japonica cultiva... 56 2e-07
gb|AAF07832.1|AC010871_8 unknown protein [Arabidopsis thaliana] 40 0.021
>ref|NP_195766.1| putative protein; protein id: At5g01460.1, supported by cDNA:
gi_18176295, supported by cDNA: gi_20465352 [Arabidopsis
thaliana] gi|11281130|pir||T48168 hypothetical protein
T10O8.170 - Arabidopsis thaliana
gi|7320724|emb|CAB81929.1| putative protein [Arabidopsis
thaliana] gi|18176296|gb|AAL60018.1| unknown protein
[Arabidopsis thaliana] gi|20465353|gb|AAM20080.1|
unknown protein [Arabidopsis thaliana]
Length = 509
Score = 72.0 bits (175), Expect = 4e-12
Identities = 33/36 (91%), Positives = 34/36 (93%)
Frame = -2
Query: 518 NVFQIAFVVLAGLTFVYYAAFGWRRKKPSGRFQLST 411
NVFQI FVVLAGLTF+YY AFGWRRKKPSGRFQLST
Sbjct: 474 NVFQIGFVVLAGLTFLYYIAFGWRRKKPSGRFQLST 509
>gb|AAK59596.1| unknown protein [Arabidopsis thaliana] gi|24417362|gb|AAN60291.1|
unknown [Arabidopsis thaliana]
Length = 509
Score = 67.0 bits (162), Expect = 1e-10
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = -2
Query: 518 NVFQIAFVVLAGLTFVYYAAFGWRRKKPSGRFQLST 411
NVFQI FV+LAGLTF+YY AFGWRRKK SGRFQLS+
Sbjct: 474 NVFQIGFVILAGLTFLYYIAFGWRRKKTSGRFQLSS 509
>ref|NP_566338.1| expressed protein; protein id: At3g08930.1, supported by cDNA:
gi_14334835 [Arabidopsis thaliana]
Length = 310
Score = 67.0 bits (162), Expect = 1e-10
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = -2
Query: 518 NVFQIAFVVLAGLTFVYYAAFGWRRKKPSGRFQLST 411
NVFQI FV+LAGLTF+YY AFGWRRKK SGRFQLS+
Sbjct: 275 NVFQIGFVILAGLTFLYYIAFGWRRKKTSGRFQLSS 310
>dbj|BAC24841.1| OSJNBa0038F22.20 [Oryza sativa (japonica cultivar-group)]
Length = 507
Score = 56.2 bits (134), Expect = 2e-07
Identities = 25/35 (71%), Positives = 28/35 (79%)
Frame = -2
Query: 518 NVFQIAFVVLAGLTFVYYAAFGWRRKKPSGRFQLS 414
NVFQ FV LA LT YYA FGWR++KP+GRFQLS
Sbjct: 472 NVFQYGFVALAILTLFYYAIFGWRKRKPTGRFQLS 506
>gb|AAF07832.1|AC010871_8 unknown protein [Arabidopsis thaliana]
Length = 482
Score = 39.7 bits (91), Expect = 0.021
Identities = 17/21 (80%), Positives = 19/21 (89%)
Frame = -2
Query: 518 NVFQIAFVVLAGLTFVYYAAF 456
NVFQI FV+LAGLTF+YY AF
Sbjct: 458 NVFQIGFVILAGLTFLYYIAF 478
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,153,419
Number of Sequences: 1393205
Number of extensions: 9443576
Number of successful extensions: 21746
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21720
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
