Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015315A_C01 KMC015315A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN71998.1| Unknown protein [Arabidopsis thaliana] 156 3e-37
dbj|BAC42585.1| unknown protein [Arabidopsis thaliana] 154 1e-36
ref|NP_198682.2| putative protein; protein id: At5g38660.1 [Arab... 111 7e-24
dbj|BAB10156.1| gene_id:MBB18.21~pir||S75762~similar to unknown ... 111 7e-24
ref|NP_442427.1| unknown protein [Synechocystis sp. PCC 6803] gi... 55 6e-07
>gb|AAN71998.1| Unknown protein [Arabidopsis thaliana]
Length = 286
Score = 156 bits (394), Expect = 3e-37
Identities = 79/102 (77%), Positives = 89/102 (86%), Gaps = 1/102 (0%)
Frame = -2
Query: 642 GDEQHLDEALKRIFQYGQGGGIPRRSAPVLQMIREEVTQDGKYVLVLVFEAKALQLSDFE 463
GDEQHL+EALKRIFQYG GGGIPRRSAP+LQ+IREEV DG+Y +VLVFEAKAL LSDFE
Sbjct: 183 GDEQHLEEALKRIFQYGLGGGIPRRSAPILQLIREEVLTDGRYCVVLVFEAKALTLSDFE 242
Query: 462 KRQAKFTSFFGPGVTAEVGKSE-KDLYEVRLISNTDPSASPS 340
KRQAKFTSFFGP +TAEVGK E ++LYEVRLISN ++ S
Sbjct: 243 KRQAKFTSFFGPNITAEVGKGESENLYEVRLISNLSTNSVSS 284
>dbj|BAC42585.1| unknown protein [Arabidopsis thaliana]
Length = 286
Score = 154 bits (388), Expect = 1e-36
Identities = 78/102 (76%), Positives = 88/102 (85%), Gaps = 1/102 (0%)
Frame = -2
Query: 642 GDEQHLDEALKRIFQYGQGGGIPRRSAPVLQMIREEVTQDGKYVLVLVFEAKALQLSDFE 463
GD QHL+EALKRIFQYG GGGIPRRSAP+LQ+IREEV DG+Y +VLVFEAKAL LSDFE
Sbjct: 183 GDAQHLEEALKRIFQYGLGGGIPRRSAPILQLIREEVLTDGRYCVVLVFEAKALTLSDFE 242
Query: 462 KRQAKFTSFFGPGVTAEVGKSE-KDLYEVRLISNTDPSASPS 340
KRQAKFTSFFGP +TAEVGK E ++LYEVRLISN ++ S
Sbjct: 243 KRQAKFTSFFGPNITAEVGKGESENLYEVRLISNLSTNSVSS 284
>ref|NP_198682.2| putative protein; protein id: At5g38660.1 [Arabidopsis thaliana]
Length = 268
Score = 111 bits (278), Expect = 7e-24
Identities = 63/102 (61%), Positives = 71/102 (68%), Gaps = 1/102 (0%)
Frame = -2
Query: 642 GDEQHLDEALKRIFQYGQGGGIPRRSAPVLQMIREEVTQDGKYVLVLVFEAKALQLSDFE 463
GDEQHL+EALKRIFQYG V DG+Y +VLVFEAKAL LSDFE
Sbjct: 183 GDEQHLEEALKRIFQYGL------------------VLTDGRYCVVLVFEAKALTLSDFE 224
Query: 462 KRQAKFTSFFGPGVTAEVGKSE-KDLYEVRLISNTDPSASPS 340
KRQAKFTSFFGP +TAEVGK E ++LYEVRLISN ++ S
Sbjct: 225 KRQAKFTSFFGPNITAEVGKGESENLYEVRLISNLSTNSVSS 266
>dbj|BAB10156.1| gene_id:MBB18.21~pir||S75762~similar to unknown protein
[Arabidopsis thaliana]
Length = 204
Score = 111 bits (278), Expect = 7e-24
Identities = 63/102 (61%), Positives = 71/102 (68%), Gaps = 1/102 (0%)
Frame = -2
Query: 642 GDEQHLDEALKRIFQYGQGGGIPRRSAPVLQMIREEVTQDGKYVLVLVFEAKALQLSDFE 463
GDEQHL+EALKRIFQYG V DG+Y +VLVFEAKAL LSDFE
Sbjct: 119 GDEQHLEEALKRIFQYGL------------------VLTDGRYCVVLVFEAKALTLSDFE 160
Query: 462 KRQAKFTSFFGPGVTAEVGKSE-KDLYEVRLISNTDPSASPS 340
KRQAKFTSFFGP +TAEVGK E ++LYEVRLISN ++ S
Sbjct: 161 KRQAKFTSFFGPNITAEVGKGESENLYEVRLISNLSTNSVSS 202
>ref|NP_442427.1| unknown protein [Synechocystis sp. PCC 6803] gi|7452243|pir||S75762
hypothetical protein slr0575 - Synechocystis sp. (strain
PCC 6803) gi|1001253|dbj|BAA10497.1|
ORF_ID:slr0575~unknown protein [Synechocystis sp. PCC
6803]
Length = 184
Score = 55.5 bits (132), Expect = 6e-07
Identities = 33/92 (35%), Positives = 49/92 (52%)
Frame = -2
Query: 642 GDEQHLDEALKRIFQYGQGGGIPRRSAPVLQMIREEVTQDGKYVLVLVFEAKALQLSDFE 463
G E HLDE+L+R+ G PVL + E+ +GKYVL L F + + L ++
Sbjct: 94 GQEAHLDESLERL-----GLSPTDEERPVLTSLLEQ-DWEGKYVLTLTFTSPFISLETWQ 147
Query: 462 KRQAKFTSFFGPGVTAEVGKSEKDLYEVRLIS 367
++Q K FFGP + V + E+ + V LIS
Sbjct: 148 EKQEKIAKFFGPDLEVTVAEPEEKVVTVNLIS 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,185,897
Number of Sequences: 1393205
Number of extensions: 10178958
Number of successful extensions: 29390
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 28639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29381
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
