Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015311A_C02 KMC015311A_c02
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA80688.1| chlorophyll a/b-binding protein 294 8e-79
pir||B34013 chlorophyll a/b-binding protein 5 - soybean 293 1e-78
pir||A34013 chlorophyll a/b-binding protein 4 - soybean 293 1e-78
gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding pro... 293 1e-78
emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum] 293 1e-78
>gb|AAA80688.1| chlorophyll a/b-binding protein
Length = 263
Score = 294 bits (752), Expect = 8e-79
Identities = 142/144 (98%), Positives = 144/144 (99%)
Frame = -2
Query: 653 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 474
GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL
Sbjct: 120 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 179
Query: 473 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 294
GEVTDP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 180 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 239
Query: 293 LADHLADPVNNNAWAFATNFVPGK 222
LADHLADPVNNNAWA+ATNFVPGK
Sbjct: 240 LADHLADPVNNNAWAYATNFVPGK 263
>pir||B34013 chlorophyll a/b-binding protein 5 - soybean
Length = 263
Score = 293 bits (751), Expect = 1e-78
Identities = 141/144 (97%), Positives = 144/144 (99%)
Frame = -2
Query: 653 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 474
GVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWATQVILMGAVEGYRIAGGPL
Sbjct: 120 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPL 179
Query: 473 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 294
GEVTDP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 180 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 239
Query: 293 LADHLADPVNNNAWAFATNFVPGK 222
LADHLADPVNNNAWA+ATNFVPGK
Sbjct: 240 LADHLADPVNNNAWAYATNFVPGK 263
>pir||A34013 chlorophyll a/b-binding protein 4 - soybean
Length = 264
Score = 293 bits (751), Expect = 1e-78
Identities = 141/144 (97%), Positives = 144/144 (99%)
Frame = -2
Query: 653 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 474
GVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWATQVILMGAVEGYRIAGGPL
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPL 180
Query: 473 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 294
GEVTDP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
Query: 293 LADHLADPVNNNAWAFATNFVPGK 222
LADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 LADHLADPVNNNAWAYATNFVPGK 264
>gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein
Length = 264
Score = 293 bits (751), Expect = 1e-78
Identities = 141/144 (97%), Positives = 144/144 (99%)
Frame = -2
Query: 653 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 474
GVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWATQVILMGAVEGYRIAGGPL
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPL 180
Query: 473 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 294
GEVTDP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
Query: 293 LADHLADPVNNNAWAFATNFVPGK 222
LADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 LADHLADPVNNNAWAYATNFVPGK 264
>emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 293 bits (750), Expect = 1e-78
Identities = 141/144 (97%), Positives = 144/144 (99%)
Frame = -2
Query: 653 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 474
GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV+LMGAVEGYRIAGGPL
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPL 182
Query: 473 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 294
GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 183 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 242
Query: 293 LADHLADPVNNNAWAFATNFVPGK 222
LADHL+DPVNNNAWA+ATNFVPGK
Sbjct: 243 LADHLSDPVNNNAWAYATNFVPGK 266
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 639,894,595
Number of Sequences: 1393205
Number of extensions: 15373261
Number of successful extensions: 39080
Number of sequences better than 10.0: 419
Number of HSP's better than 10.0 without gapping: 36292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38911
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
