Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015290A_C01 KMC015290A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P93768|PSD3_TOBAC Probable 26S proteasome non-ATPase regulato... 188 4e-47
dbj|BAB82474.1| 21D7 [Oryza sativa (japonica cultivar-group)] 181 7e-45
sp|Q06364|PSD3_DAUCA Probable 26S proteasome non-ATPase regulato... 181 9e-45
pir||JQ2257 nuclear antigen 21D7 - carrot gi|217911|dbj|BAA02696... 181 9e-45
dbj|BAB78499.1| 26S proteasome regulatory particle non-ATPase su... 180 1e-44
>sp|P93768|PSD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3 (26S
proteasome subunit S3) (Nuclear antigen 21D7)
gi|7447677|pir||T02207 protein 21D7 - common tobacco
gi|1864003|dbj|BAA19252.1| 21D7 [Nicotiana tabacum]
Length = 488
Score = 188 bits (478), Expect = 4e-47
Identities = 90/92 (97%), Positives = 92/92 (99%)
Frame = -2
Query: 628 AIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNT 449
AIRDGAIDATLDHANGWMVSKETGDIYSTNEPQ+AFNSRIAFCLNMHNEAVRALRFPPN+
Sbjct: 397 AIRDGAIDATLDHANGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHNEAVRALRFPPNS 456
Query: 448 HKEKESAEKRRERQQQEQELAKHIAEEDDDDF 353
HKEKESAEKRRERQQQEQELAKHIAEEDDDDF
Sbjct: 457 HKEKESAEKRRERQQQEQELAKHIAEEDDDDF 488
>dbj|BAB82474.1| 21D7 [Oryza sativa (japonica cultivar-group)]
Length = 487
Score = 181 bits (459), Expect = 7e-45
Identities = 84/92 (91%), Positives = 91/92 (98%)
Frame = -2
Query: 628 AIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNT 449
AIRDGAIDAT+DHANGWMVSKETGD+YSTNEPQ+AFNSRIAFCLNMHNEAV+ALRFPPN+
Sbjct: 396 AIRDGAIDATIDHANGWMVSKETGDVYSTNEPQIAFNSRIAFCLNMHNEAVKALRFPPNS 455
Query: 448 HKEKESAEKRRERQQQEQELAKHIAEEDDDDF 353
HKEKESAEKRRER QQE+ELAKH+AEEDDDDF
Sbjct: 456 HKEKESAEKRRERLQQEEELAKHMAEEDDDDF 487
>sp|Q06364|PSD3_DAUCA Probable 26S proteasome non-ATPase regulatory subunit 3 (26S
proteasome subunit S3) (Nuclear antigen 21D7)
Length = 489
Score = 181 bits (458), Expect = 9e-45
Identities = 86/92 (93%), Positives = 90/92 (97%)
Frame = -2
Query: 628 AIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNT 449
AIRDGAIDAT+DHANGWMVSKETGDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFP N+
Sbjct: 398 AIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANS 457
Query: 448 HKEKESAEKRRERQQQEQELAKHIAEEDDDDF 353
HK+KESAEKRRERQQQEQELAKHIAEEDDD+F
Sbjct: 458 HKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
>pir||JQ2257 nuclear antigen 21D7 - carrot gi|217911|dbj|BAA02696.1| 21D7
antigen [Daucus carota]
Length = 488
Score = 181 bits (458), Expect = 9e-45
Identities = 86/92 (93%), Positives = 90/92 (97%)
Frame = -2
Query: 628 AIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNT 449
AIRDGAIDAT+DHANGWMVSKETGDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFP N+
Sbjct: 397 AIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANS 456
Query: 448 HKEKESAEKRRERQQQEQELAKHIAEEDDDDF 353
HK+KESAEKRRERQQQEQELAKHIAEEDDD+F
Sbjct: 457 HKDKESAEKRRERQQQEQELAKHIAEEDDDEF 488
>dbj|BAB78499.1| 26S proteasome regulatory particle non-ATPase subunit3 [Oryza
sativa (japonica cultivar-group)]
Length = 419
Score = 180 bits (457), Expect = 1e-44
Identities = 83/92 (90%), Positives = 91/92 (98%)
Frame = -2
Query: 628 AIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNT 449
AIRDGAIDAT+DHANGWMVSKETGD+YSTNEPQ+AFNSRIAFCLNMHNEAV+A+RFPPN+
Sbjct: 328 AIRDGAIDATIDHANGWMVSKETGDVYSTNEPQIAFNSRIAFCLNMHNEAVKAMRFPPNS 387
Query: 448 HKEKESAEKRRERQQQEQELAKHIAEEDDDDF 353
HKEKESAEKRRER QQE+ELAKH+AEEDDDDF
Sbjct: 388 HKEKESAEKRRERLQQEEELAKHMAEEDDDDF 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,965,427
Number of Sequences: 1393205
Number of extensions: 10434968
Number of successful extensions: 43745
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 36028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42186
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
