Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015285A_C01 KMC015285A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P11891|RK18_PEA 50S RIBOSOMAL PROTEIN L18, CHLOROPLAST PRECUR... 114 9e-25
ref|NP_191250.1| ribosomal protein, chloroplast; protein id: At3... 97 1e-19
gb|AAF72995.1|AF261940_1 ribosomal protein 5 precursor [Spinacia... 94 9e-19
gb|AAK68822.1| ribosomal protein, chloroplast [Arabidopsis thali... 94 1e-18
dbj|BAA89561.1| unnamed protein product [Oryza sativa (japonica ... 92 3e-18
>sp|P11891|RK18_PEA 50S RIBOSOMAL PROTEIN L18, CHLOROPLAST PRECURSOR (CL18)
gi|71262|pir||R5PM18 ribosomal protein PsCL18 precursor,
chloroplast - garden pea gi|20869|emb|CAA32186.1| PsCL18
ribosomal preprotein (AA -49 to 96) [Pisum sativum]
Length = 145
Score = 114 bits (284), Expect = 9e-25
Identities = 63/85 (74%), Positives = 69/85 (81%)
Frame = -1
Query: 520 AAADSGGAEGVASPEEPGESKKEGDAVVPVDKLPLESKLKEREEQRLRMKLAKKIRLRRK 341
A ADS A+GV E ESKKE D VV VDKLPLESKLKEREE+ L+MKLAKKIRL+RK
Sbjct: 66 AGADSNVADGV----EESESKKESD-VVSVDKLPLESKLKEREERMLKMKLAKKIRLKRK 120
Query: 340 RLVRKRHLRKKGRWPPSKMKKLKNV 266
RLV+KR LRKKG WPPSKMKKL+ V
Sbjct: 121 RLVQKRRLRKKGNWPPSKMKKLEGV 145
>ref|NP_191250.1| ribosomal protein, chloroplast; protein id: At3g56910.1, supported
by cDNA: gi_14596188 [Arabidopsis thaliana]
gi|11276811|pir||T51279 ribosomal protein, chloroplast -
Arabidopsis thaliana gi|9663010|emb|CAC00754.1|
ribosomal protein, chloroplast [Arabidopsis thaliana]
Length = 148
Score = 96.7 bits (239), Expect = 1e-19
Identities = 57/86 (66%), Positives = 63/86 (72%), Gaps = 3/86 (3%)
Frame = -1
Query: 514 ADSGGAEGVASPEEPGESKKEGDAVVPVDKLPLESKLKERE---EQRLRMKLAKKIRLRR 344
A + G +G A PE E K A VPVDKLPLESK + + E RL+MKLAKKIRLRR
Sbjct: 65 AAASGVDG-AEPESK-EEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRR 122
Query: 343 KRLVRKRHLRKKGRWPPSKMKKLKNV 266
KRLVRKR +RKKGRWPPSKMKK KNV
Sbjct: 123 KRLVRKRKMRKKGRWPPSKMKKNKNV 148
>gb|AAF72995.1|AF261940_1 ribosomal protein 5 precursor [Spinacia oleracea]
Length = 142
Score = 94.0 bits (232), Expect = 9e-19
Identities = 49/81 (60%), Positives = 60/81 (73%)
Frame = -1
Query: 508 SGGAEGVASPEEPGESKKEGDAVVPVDKLPLESKLKEREEQRLRMKLAKKIRLRRKRLVR 329
S AE A E G+ K +A + V LPLESKL+ + EQ+++MK+AKKIRLRR RL+R
Sbjct: 64 SAAAEETAG--EDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLMR 121
Query: 328 KRHLRKKGRWPPSKMKKLKNV 266
KR LRK+G WPPSKMKKLKNV
Sbjct: 122 KRKLRKRGAWPPSKMKKLKNV 142
>gb|AAK68822.1| ribosomal protein, chloroplast [Arabidopsis thaliana]
Length = 148
Score = 93.6 bits (231), Expect = 1e-18
Identities = 56/86 (65%), Positives = 62/86 (71%), Gaps = 3/86 (3%)
Frame = -1
Query: 514 ADSGGAEGVASPEEPGESKKEGDAVVPVDKLPLESKLKERE---EQRLRMKLAKKIRLRR 344
A + G +G A PE E K A V VDKLPLESK + + E RL+MKLAKKIRLRR
Sbjct: 65 AAASGVDG-AEPESK-EEPKTVVAAVQVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRR 122
Query: 343 KRLVRKRHLRKKGRWPPSKMKKLKNV 266
KRLVRKR +RKKGRWPPSKMKK KNV
Sbjct: 123 KRLVRKRKMRKKGRWPPSKMKKNKNV 148
>dbj|BAA89561.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 326
Score = 92.4 bits (228), Expect = 3e-18
Identities = 50/86 (58%), Positives = 62/86 (71%), Gaps = 1/86 (1%)
Frame = -1
Query: 520 AAADSGGAE-GVASPEEPGESKKEGDAVVPVDKLPLESKLKEREEQRLRMKLAKKIRLRR 344
A+A++G E G PEEP + V ++ +PLE+K K EQR +MKLAKK+R RR
Sbjct: 248 ASAEAGAEEAGTDQPEEPKPT-------VSIETMPLETKQKMIMEQRAKMKLAKKLRQRR 300
Query: 343 KRLVRKRHLRKKGRWPPSKMKKLKNV 266
+RLV+KR LRKKGRWPPSKMKKLKNV
Sbjct: 301 RRLVQKRRLRKKGRWPPSKMKKLKNV 326
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,478,808
Number of Sequences: 1393205
Number of extensions: 9701249
Number of successful extensions: 65007
Number of sequences better than 10.0: 229
Number of HSP's better than 10.0 without gapping: 44529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57534
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
