Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015280A_C01 KMC015280A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F84728 probable CCR4-associated factor [imported] - Arabido... 188 2e-47
ref|NP_565735.1| putative CCR4-associated factor; protein id: At... 188 2e-47
ref|NP_178193.1| CCR4-associated factor, putative\0CCR4-associat... 187 4e-47
ref|NP_196657.1| CCR4-ASSOCIATED FACTOR -like protein; protein ... 153 1e-36
gb|AAK92792.1| putative CCR4-associated factor [Arabidopsis thal... 150 7e-36
>pir||F84728 probable CCR4-associated factor [imported] - Arabidopsis thaliana
Length = 252
Score = 188 bits (478), Expect = 2e-47
Identities = 88/107 (82%), Positives = 98/107 (91%)
Frame = -1
Query: 494 GYLLKLLTCQDLPDTQVGFFNMINMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVG 315
GYLLKLLTCQ+LP+TQ GFF MI++YFP +YDIKHLMKFCNSLHGGLNKLAELL+VERVG
Sbjct: 146 GYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVG 205
Query: 314 ISHQAGSDSLLTSCTFRKLKENFFSGSLEKYAGILYGLGCENGHGSH 174
I HQAGSDSLLTSCTFRKL+ENFF GS+EKY+G+LYGLG ENG H
Sbjct: 206 ICHQAGSDSLLTSCTFRKLQENFFIGSMEKYSGVLYGLGVENGQIVH 252
>ref|NP_565735.1| putative CCR4-associated factor; protein id: At2g32070.1, supported
by cDNA: gi_15293024 [Arabidopsis thaliana]
gi|15293025|gb|AAK93623.1| putative CCR4-associated
factor [Arabidopsis thaliana] gi|20197620|gb|AAD15397.2|
putative CCR4-associated factor [Arabidopsis thaliana]
gi|23296713|gb|AAN13153.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 275
Score = 188 bits (478), Expect = 2e-47
Identities = 88/107 (82%), Positives = 98/107 (91%)
Frame = -1
Query: 494 GYLLKLLTCQDLPDTQVGFFNMINMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVG 315
GYLLKLLTCQ+LP+TQ GFF MI++YFP +YDIKHLMKFCNSLHGGLNKLAELL+VERVG
Sbjct: 169 GYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVG 228
Query: 314 ISHQAGSDSLLTSCTFRKLKENFFSGSLEKYAGILYGLGCENGHGSH 174
I HQAGSDSLLTSCTFRKL+ENFF GS+EKY+G+LYGLG ENG H
Sbjct: 229 ICHQAGSDSLLTSCTFRKLQENFFIGSMEKYSGVLYGLGVENGQIVH 275
>ref|NP_178193.1| CCR4-associated factor, putative\0CCR4-associated factor, putative;
protein id: At1g80780.1, supported by cDNA: gi_17979380,
supported by cDNA: gi_20465784 [Arabidopsis thaliana]
gi|25363292|pir||D96840 hypothetical protein F23A5.13
[imported] - Arabidopsis thaliana
gi|6503290|gb|AAF14666.1|AC011713_14 Similar to
gb|U21855 CCR4-associated factor 1 (CAF1) from Mus
musculus. ESTs gb|AAA394972, gb|AA585812 and gb|H77015
come from this gene. [Arabidopsis thaliana]
gi|17979381|gb|AAL49916.1| putative CCR4-associated
factorCCR4-associated factor [Arabidopsis thaliana]
gi|20465785|gb|AAM20381.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 274
Score = 187 bits (476), Expect = 4e-47
Identities = 88/103 (85%), Positives = 95/103 (91%)
Frame = -1
Query: 494 GYLLKLLTCQDLPDTQVGFFNMINMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVG 315
GYLLKLLTCQ+LPD+Q FF +IN+YFPT+YDIKHLMKFCNSLHGGLNKLAELLEVERVG
Sbjct: 168 GYLLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVG 227
Query: 314 ISHQAGSDSLLTSCTFRKLKENFFSGSLEKYAGILYGLGCENG 186
I HQAGSDSLLTSCTFRKLKENFF G L KY+G+LYGLG ENG
Sbjct: 228 ICHQAGSDSLLTSCTFRKLKENFFVGPLHKYSGVLYGLGVENG 270
>ref|NP_196657.1| CCR4-ASSOCIATED FACTOR -like protein; protein id: At5g10960.1,
supported by cDNA: gi_15292842 [Arabidopsis thaliana]
gi|11288398|pir||T50805 CCR4-ASSOCIATED FACTOR-like
protein - Arabidopsis thaliana
gi|8979730|emb|CAB96851.1| CCR4-ASSOCIATED FACTOR-like
protein [Arabidopsis thaliana]
gi|23296319|gb|AAN13040.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 277
Score = 153 bits (386), Expect = 1e-36
Identities = 72/103 (69%), Positives = 85/103 (81%)
Frame = -1
Query: 494 GYLLKLLTCQDLPDTQVGFFNMINMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVG 315
GYL+KLLTC++LP Q FF ++ +YFPT+YDIKHLM FCN L GGLN+LAEL+ VERVG
Sbjct: 168 GYLVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVG 227
Query: 314 ISHQAGSDSLLTSCTFRKLKENFFSGSLEKYAGILYGLGCENG 186
I HQAGSDSLLT +FRKLKE +F GS EKY G+LYGLG E+G
Sbjct: 228 ICHQAGSDSLLTLGSFRKLKERYFPGSTEKYTGVLYGLGVEDG 270
>gb|AAK92792.1| putative CCR4-associated factor [Arabidopsis thaliana]
Length = 277
Score = 150 bits (379), Expect = 7e-36
Identities = 71/103 (68%), Positives = 84/103 (80%)
Frame = -1
Query: 494 GYLLKLLTCQDLPDTQVGFFNMINMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVG 315
GYL+KLLTC++LP Q FF ++ +YFPT+YDIKHLM FCN L GGLN+LAEL+ VERVG
Sbjct: 168 GYLVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVG 227
Query: 314 ISHQAGSDSLLTSCTFRKLKENFFSGSLEKYAGILYGLGCENG 186
I HQAGSDSLLT +FRK KE +F GS EKY G+LYGLG E+G
Sbjct: 228 ICHQAGSDSLLTLGSFRKPKERYFPGSTEKYTGVLYGLGVEDG 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,082,686
Number of Sequences: 1393205
Number of extensions: 9088411
Number of successful extensions: 28976
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 27615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28885
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
