Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015275A_C01 KMC015275A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176747.1| small nuclear ribonucleoprotein, putative; prot... 157 1e-37
pir||G96681 protein F1E22.8 [imported] - Arabidopsis thaliana gi... 143 1e-33
gb|EAA00327.1| agCP9543 [Anopheles gambiae str. PEST] 127 7e-29
ref|NP_647660.1| CG2021-PA [Drosophila melanogaster] gi|7292155|... 125 4e-28
ref|NP_057284.1| U6 snRNA-associated Sm-like protein LSm8 [Homo ... 124 1e-27
>ref|NP_176747.1| small nuclear ribonucleoprotein, putative; protein id: At1g65700.1,
supported by cDNA: 30530., supported by cDNA:
gi_17979538, supported by cDNA: gi_20334917 [Arabidopsis
thaliana] gi|17979539|gb|AAL50104.1| At1g65700/F1E22_3
[Arabidopsis thaliana] gi|20334918|gb|AAM16215.1|
At1g65700/F1E22_3 [Arabidopsis thaliana]
gi|21592627|gb|AAM64576.1| small nuclear
ribonucleoprotein, putative [Arabidopsis thaliana]
Length = 98
Score = 157 bits (396), Expect = 1e-37
Identities = 79/98 (80%), Positives = 86/98 (87%)
Frame = +1
Query: 193 MSTGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALG 372
M+ GLE+LVDQ ISVITNDGRNIVG LKGFDQATNIILDESHERVFSTKEGVQ LG
Sbjct: 1 MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60
Query: 373 LYIIRGDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 486
LYIIRGDNI V+GELDE+LD +LD SK+RA PLKPV+H
Sbjct: 61 LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98
>pir||G96681 protein F1E22.8 [imported] - Arabidopsis thaliana
gi|6686407|gb|AAF23841.1|AC007234_13 F1E22.8
[Arabidopsis thaliana]
Length = 583
Score = 143 bits (361), Expect = 1e-33
Identities = 71/84 (84%), Positives = 76/84 (89%)
Frame = +1
Query: 235 ISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRGDNISVVGE 414
ISVITNDGRNIVG LKGFDQATNIILDESHERVFSTKEGVQ LGLYIIRGDNI V+GE
Sbjct: 500 ISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGE 559
Query: 415 LDEDLDKNLDKSKIRAQPLKPVIH 486
LDE+LD +LD SK+RA PLKPV+H
Sbjct: 560 LDEELDASLDFSKLRAHPLKPVVH 583
>gb|EAA00327.1| agCP9543 [Anopheles gambiae str. PEST]
Length = 95
Score = 127 bits (320), Expect = 7e-29
Identities = 58/93 (62%), Positives = 74/93 (79%)
Frame = +1
Query: 208 GLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIR 387
GLES V+ +S+IT DGRN VGTLKGFDQ N+ILDESHERV+S G++ + LGL+IIR
Sbjct: 3 GLESYVNNTVSIITADGRNFVGTLKGFDQTVNVILDESHERVYSMTAGIEQVVLGLHIIR 62
Query: 388 GDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 486
GDNI+++G+LDE +D LD S IR PL+PV+H
Sbjct: 63 GDNIAIIGQLDESVDSKLDFSTIRGMPLEPVVH 95
>ref|NP_647660.1| CG2021-PA [Drosophila melanogaster] gi|7292155|gb|AAF47567.1|
CG2021-PA [Drosophila melanogaster]
Length = 95
Score = 125 bits (314), Expect = 4e-28
Identities = 57/93 (61%), Positives = 73/93 (78%)
Frame = +1
Query: 208 GLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIR 387
GLES ++ +S+IT DGRN +GTLKGFDQ NII+DE HERVFST G++ I LGL+IIR
Sbjct: 3 GLESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIR 62
Query: 388 GDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 486
GDNI+V+G +DE +D LD + IR +PL PV+H
Sbjct: 63 GDNIAVIGLIDETIDSRLDLANIRGEPLGPVVH 95
>ref|NP_057284.1| U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]
gi|19527156|ref|NP_598700.1| expressed sequence AW214405
[Mus musculus] gi|27709054|ref|XP_216102.1| similar to
U6 snRNA-associated Sm-like protein LSm8 [Mus musculus]
[Rattus norvegicus] gi|10720071|sp|O95777|LSM8_HUMAN U6
snRNA-associated Sm-like protein LSm8
gi|4309884|gb|AAD15542.1| similar to Schizosaccharomyces
pombe splicing factor; similar to PID:3395591 [Homo
sapiens] gi|5919157|gb|AAD56232.1|AF182294_1 U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
gi|12803805|gb|AAH02742.1|AAH02742 U6 snRNA-associated
Sm-like protein LSm8 [Homo sapiens]
gi|18044123|gb|AAH19458.1| RIKEN cDNA 2010003I05 gene
[Mus musculus] gi|18490261|gb|AAH22440.1| U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
gi|26353716|dbj|BAC40488.1| unnamed protein product [Mus
musculus]
Length = 96
Score = 124 bits (310), Expect = 1e-27
Identities = 56/92 (60%), Positives = 75/92 (80%)
Frame = +1
Query: 211 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 390
LE+ +++ ++VIT+DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ + LGLYI+RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 391 DNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 486
DN++V+GE+DE+ D LD IRA+PL V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,167,111
Number of Sequences: 1393205
Number of extensions: 9839560
Number of successful extensions: 24952
Number of sequences better than 10.0: 196
Number of HSP's better than 10.0 without gapping: 24234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24920
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
