Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015270A_C01 KMC015270A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564506.1| expressed protein; protein id: At1g47420.1, sup... 117 1e-25
gb|AAL77110.1|AF474373_7 unknown [Hordeum vulgare] 114 5e-25
emb|CAD40922.1| OSJNBa0033G16.1 [Oryza sativa (japonica cultivar... 109 2e-23
gb|AAB92475.1| IAA25 [Arabidopsis thaliana] 33 1.9
gb|AAB92474.1| IAA23 [Arabidopsis thaliana] 33 1.9
>ref|NP_564506.1| expressed protein; protein id: At1g47420.1, supported by cDNA:
10618., supported by cDNA: gi_12744994, supported by
cDNA: gi_15450965, supported by cDNA: gi_17104550
[Arabidopsis thaliana] gi|25091506|sp|Q9SX77|UMP6_ARATH
Unknown protein At1g47420, mitochondrial precursor
gi|25405206|pir||H96514 hypothetical protein F16N3.26
[imported] - Arabidopsis thaliana
gi|5668814|gb|AAD46040.1|AC007519_25 ESTs gb|H36253 and
gb|AA04251 come from this gene. [Arabidopsis thaliana]
gi|12744995|gb|AAK06877.1|AF344326_1 unknown protein
[Arabidopsis thaliana] gi|14334512|gb|AAK59453.1|
unknown protein [Arabidopsis thaliana]
gi|15450966|gb|AAK96754.1| Unknown protein [Arabidopsis
thaliana] gi|17104551|gb|AAL34164.1| unknown protein
[Arabidopsis thaliana] gi|21536627|gb|AAM60959.1|
unknown [Arabidopsis thaliana]
gi|23198274|gb|AAN15664.1| Unknown protein [Arabidopsis
thaliana]
Length = 257
Score = 117 bits (292), Expect = 1e-25
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = -3
Query: 506 MANALRVIFDRYTTYLNSFGPEETYLQKKVETELGSKMIHLKMRCSGLGSEWGKVTVLGT 327
+ +ALR + RY YL+SF PEE YL+KKVE ELG+KMIHLKMRCSGLGSEWGKVTVLGT
Sbjct: 186 ITDALRTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGT 245
Query: 326 SGLAGSYVDQRA 291
SGL+GSYV+QRA
Sbjct: 246 SGLSGSYVEQRA 257
>gb|AAL77110.1|AF474373_7 unknown [Hordeum vulgare]
Length = 245
Score = 114 bits (286), Expect = 5e-25
Identities = 50/73 (68%), Positives = 64/73 (87%)
Frame = -3
Query: 509 HMANALRVIFDRYTTYLNSFGPEETYLQKKVETELGSKMIHLKMRCSGLGSEWGKVTVLG 330
++ A++ + RY TYL SFGPEE YL+KKVETELG+KMIHLKMRCSG+GSEWGK+T++G
Sbjct: 173 YLEEAVKSAYSRYMTYLESFGPEEHYLRKKVETELGTKMIHLKMRCSGIGSEWGKITLIG 232
Query: 329 TSGLAGSYVDQRA 291
TSG++GSYV+ RA
Sbjct: 233 TSGISGSYVEMRA 245
>emb|CAD40922.1| OSJNBa0033G16.1 [Oryza sativa (japonica cultivar-group)]
Length = 231
Score = 109 bits (273), Expect = 2e-23
Identities = 48/73 (65%), Positives = 63/73 (85%)
Frame = -3
Query: 509 HMANALRVIFDRYTTYLNSFGPEETYLQKKVETELGSKMIHLKMRCSGLGSEWGKVTVLG 330
++ +A++ + RY YL SFGPEE YL+KKVE ELG+KMIHLKMRCSG+GSEWGK+T++G
Sbjct: 159 YIEDAVKSAYKRYMKYLESFGPEENYLRKKVENELGTKMIHLKMRCSGVGSEWGKITLIG 218
Query: 329 TSGLAGSYVDQRA 291
TSG++GSYV+ RA
Sbjct: 219 TSGISGSYVELRA 231
>gb|AAB92475.1| IAA25 [Arabidopsis thaliana]
Length = 476
Score = 33.1 bits (74), Expect = 1.9
Identities = 18/52 (34%), Positives = 26/52 (49%)
Frame = +2
Query: 302 PHMNLQAQKFQEP*PFPTQNQGHCISFSSVSSLSPALSPPSSADRSPQAQKN 457
PH LQ+Q+ Q+ PT +QGH S ++ L PP PQ ++N
Sbjct: 115 PHHQLQSQQLQQ---LPTLSQGHQFPSSCTNNGLSTLQPPQMLVSRPQEKQN 163
>gb|AAB92474.1| IAA23 [Arabidopsis thaliana]
Length = 591
Score = 33.1 bits (74), Expect = 1.9
Identities = 18/52 (34%), Positives = 26/52 (49%)
Frame = +2
Query: 302 PHMNLQAQKFQEP*PFPTQNQGHCISFSSVSSLSPALSPPSSADRSPQAQKN 457
PH LQ+Q+ Q+ PT +QGH S ++ L PP PQ ++N
Sbjct: 215 PHHQLQSQQLQQ---LPTLSQGHQFPSSCTNNGLSTLQPPQMLVSRPQEKQN 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,495,110
Number of Sequences: 1393205
Number of extensions: 8396693
Number of successful extensions: 22656
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 22086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22645
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
