Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015264A_C01 KMC015264A_c01
(484 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E86174 protein F19P19.26 [imported] - Arabidopsis thaliana ... 31 6.2
ref|NP_175509.1| gibberellin 20-oxidase, putative; protein id: A... 31 6.2
ref|NP_171926.1| unknown protein; protein id: At1g04300.1 [Arabi... 31 6.2
dbj|BAB09580.1| contains similarity to unknown protein~gb|AAF034... 31 8.1
ref|NP_197283.1| homeodomain protein; protein id: At5g17810.1 [A... 31 8.1
>pir||E86174 protein F19P19.26 [imported] - Arabidopsis thaliana
gi|2341042|gb|AAB70446.1| F19P19.26 [Arabidopsis
thaliana]
Length = 954
Score = 31.2 bits (69), Expect = 6.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 376 LGSSATEFSPAEVHHEITPIGLPEFSFDKAPTS 278
LGSS++ F+ H + P LP S+ +APTS
Sbjct: 778 LGSSSSSFNHHPSSHGVVPTTLPSSSYSQAPTS 810
>ref|NP_175509.1| gibberellin 20-oxidase, putative; protein id: At1g50960.1
[Arabidopsis thaliana] gi|25285687|pir||G96546 probable
gibberellin 20-oxidase [imported] - Arabidopsis thaliana
gi|12321803|gb|AAG50945.1|AC079284_20 gibberellin
20-oxidase, putative [Arabidopsis thaliana]
Length = 336
Score = 31.2 bits (69), Expect = 6.2
Identities = 28/91 (30%), Positives = 41/91 (44%), Gaps = 5/91 (5%)
Frame = +3
Query: 69 TV*KNYTCKIAATVKDCCYVTG----VTG*ILEN-FTCVKTCLRLGTINQVVRGSTLFHT 233
T+ + Y +IA + C + G V+ EN F + LRL + V GS +F
Sbjct: 154 TIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENSFLRLNKYHPSVFGSEVFGL 213
Query: 234 GSFNAMSPLTIIYSLLVGALSNENSGKPIGV 326
S LTI+ +G L EN+G+ I V
Sbjct: 214 VPHTDTSFLTILSQDQIGGLELENNGQWISV 244
>ref|NP_171926.1| unknown protein; protein id: At1g04300.1 [Arabidopsis thaliana]
Length = 1082
Score = 31.2 bits (69), Expect = 6.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 376 LGSSATEFSPAEVHHEITPIGLPEFSFDKAPTS 278
LGSS++ F+ H + P LP S+ +APTS
Sbjct: 856 LGSSSSSFNHHPSSHGVVPTTLPSSSYSQAPTS 888
>dbj|BAB09580.1| contains similarity to unknown
protein~gb|AAF03478.1~gene_id:MVA3.17 [Arabidopsis
thaliana]
Length = 219
Score = 30.8 bits (68), Expect = 8.1
Identities = 16/36 (44%), Positives = 22/36 (60%)
Frame = -3
Query: 113 FYRCSNLACIIFLDGSTSTSIPT*FFFTLINKESYC 6
F CSNL+ FL+GS+S+ IP+ FF L + C
Sbjct: 122 FGSCSNLSANYFLNGSSSSQIPS-FFLGLSSSSGGC 156
>ref|NP_197283.1| homeodomain protein; protein id: At5g17810.1 [Arabidopsis thaliana]
Length = 268
Score = 30.8 bits (68), Expect = 8.1
Identities = 16/36 (44%), Positives = 22/36 (60%)
Frame = -3
Query: 113 FYRCSNLACIIFLDGSTSTSIPT*FFFTLINKESYC 6
F CSNL+ FL+GS+S+ IP+ FF L + C
Sbjct: 122 FGSCSNLSANYFLNGSSSSQIPS-FFLGLSSSSGGC 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,424,132
Number of Sequences: 1393205
Number of extensions: 8904156
Number of successful extensions: 18385
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18380
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
